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Aliases for MIR5571 Gene

Subcategory (RNA class) for MIR5571 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR5571 Gene

  • MicroRNA 5571 2 3 5
  • Hsa-Mir-5571 3

External Ids for MIR5571 Gene

Previous GeneCards Identifiers for MIR5571 Gene

  • GC22U900834

Summaries for MIR5571 Gene

Entrez Gene Summary for MIR5571 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5571 Gene

MIR5571 (MicroRNA 5571) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR5571 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5571 Gene

Genomics for MIR5571 Gene

GeneHancer (GH) Regulatory Elements for MIR5571 Gene

Promoters and enhancers for MIR5571 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22I022884 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 550.8 -1.0 -1039 0.9 POLR2A MCM2 RELA MIR5571 SMARCB1 LOC102724638 LOC105372948 IGL
GH22I022887 Promoter/Enhancer 0.9 EPDnew dbSUPER 550.8 +1.5 1544 0.1 POLR2A PRDM10 IGLL5 MIR5571 IGLJ1 LOC105372948 IGL
GH22I022883 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.8 -2.0 -2040 0.5 CTCF CLOCK ATF1 RB1 TEAD4 RAD21 CC2D1A POLR2A SMC3 MAFK IGLL5 MIR5571 LOC102724638 LOC105372948 IGL
GH22I022882 Enhancer 0.7 ENCODE dbSUPER 0.8 -3.8 -3791 0.1 CTBP1 POLR2A ZBED1 ZNF24 HDAC8 LOC102724638 IGLV3-1 MIR5571 LOC105372948 IGL
GH22I022881 Enhancer 0.6 dbSUPER 0.8 -4.7 -4674 0.9 CTCF MCM3 PHF21A BHLHE40 ZBED1 CBFA2T3 ELF1 MCM2 RELA MCM7 IGLV3-1 LOC102724638 MMP11 TOP3B SMARCB1 ZNF70 MIR5571 LOC105372948 IGL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR5571 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR5571 Gene

Genomic Locations for MIR5571 Gene
chr22:22,886,267-22,886,379
(GRCh38/hg38)
Size:
113 bases
Orientation:
Plus strand

Genomic View for MIR5571 Gene

Genes around MIR5571 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5571 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5571 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5571 Gene

Proteins for MIR5571 Gene

Post-translational modifications for MIR5571 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5571 Gene

Domains & Families for MIR5571 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5571 Gene

Function for MIR5571 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5571 Gene

Localization for MIR5571 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR5571 Gene

Pathways & Interactions for MIR5571 Gene

SuperPathways for MIR5571 Gene

No Data Available

Interacting Proteins for MIR5571 Gene

Gene Ontology (GO) - Biological Process for MIR5571 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR5571 Gene

Drugs & Compounds for MIR5571 Gene

No Compound Related Data Available

Transcripts for MIR5571 Gene

mRNA/cDNA for MIR5571 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5571 Gene

No ASD Table

Relevant External Links for MIR5571 Gene

GeneLoc Exon Structure for
MIR5571
ECgene alternative splicing isoforms for
MIR5571

Expression for MIR5571 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR5571 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5571 Gene:

MIR5571
genes like me logo Genes that share expression patterns with MIR5571: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR5571 Gene

Orthologs for MIR5571 Gene

Evolution for MIR5571 Gene

ENSEMBL:
Gene Tree for MIR5571 (if available)
TreeFam:
Gene Tree for MIR5571 (if available)

No data available for Orthologs for MIR5571 Gene

Paralogs for MIR5571 Gene

No data available for Paralogs for MIR5571 Gene

Variants for MIR5571 Gene

Sequence variations from dbSNP and Humsavar for MIR5571 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1002267499 -- 22,884,666(+) T/C upstream_transcript_variant
rs1004732047 -- 22,886,788(+) A/G downstream_transcript_variant
rs1006854639 -- 22,886,175(+) T/C upstream_transcript_variant
rs1007198207 -- 22,885,011(+) A/G upstream_transcript_variant
rs1011048772 -- 22,885,974(+) C/G upstream_transcript_variant

Additional Variant Information for MIR5571 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR5571

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR5571 Gene

Disorders for MIR5571 Gene

Additional Disease Information for MIR5571

No disorders were found for MIR5571 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5571 Gene

Publications for MIR5571 Gene

  1. Deep sequencing of short RNAs reveals novel microRNAs in minor salivary glands of patients with Sjögren's syndrome. (PMID: 21895886) Tandon M … Alevizos I (Oral diseases 2012) 3 58
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58
  3. One-megabase sequence analysis of the human immunoglobulin lambda gene locus. (PMID: 9074928) Kawasaki K … Shimizu N (Genome research 1997) 3 58

Products for MIR5571 Gene

Sources for MIR5571 Gene

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