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Aliases for MIR555 Gene

Subcategory (RNA class) for MIR555 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR555 Gene

  • MicroRNA 555 2 3 5
  • Hsa-Mir-555 3
  • MIRN555 3

External Ids for MIR555 Gene

Previous HGNC Symbols for MIR555 Gene

  • MIRN555

Previous GeneCards Identifiers for MIR555 Gene

  • GC01M153584
  • GC01M155316
  • GC01M155347

Summaries for MIR555 Gene

Entrez Gene Summary for MIR555 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR555 Gene

MIR555 (MicroRNA 555) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are PKMTs methylate histone lysines and Chromatin organization.

fRNAdb sequence ontologies for MIR555 Gene

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

View fRNAdb secondary structures for MIR555

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR555 Gene

Genomics for MIR555 Gene

Regulatory Elements for MIR555 Gene

Enhancers for MIR555 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G155242 1.5 ENCODE dbSUPER 10.2 +102.2 102203 2.9 CREB3L1 FEZF1 YBX1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 SP3 TBX21 KIAA0907 ENSG00000271267 RUSC1-AS1 MSTO2P ASH1L THBS3 PYGO2 LOC101928120 GBA BGLAP
GH01G155650 1.5 FANTOM5 Ensembl ENCODE 10.1 -305.2 -305151 2.3 TBP NFIB INSM2 SIN3A BMI1 ZNF366 SCRT2 FOS DEK SP3 SCAMP3 FAM189B ASH1L RUSC1 RUSC1-AS1 MIR555 DAP3 PIR48789 LOC100419799
GH01G155499 1.3 FANTOM5 Ensembl ENCODE 10.5 -153.6 -153601 1.6 NFIB INSM2 ZNF384 CHD7 ARID3A ZNF366 ZBTB48 PRDM10 YY2 ZNF394 ASH1L RNU6-1297P MIR555 RUSC1 RUSC1-AS1 FDPS ARHGEF2 RIT1 MTX1 YY1AP1
GH01G155240 1.3 ENCODE dbSUPER 10.2 +105.0 105027 1.6 PKNOX1 ARNT ARID4B SIN3A DMAP1 YY1 ZNF143 FOS SP3 ZHX2 HCN3 KRTCAP2 TRIM46 PKLR FDPS RUSC1 RUSC1-AS1 MIR555 ASH1L MUC1
GH01G155307 1.2 ENCODE 10.9 +37.3 37345 3.8 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 GBA HCN3 SCAMP3 FAM189B MSTO2P CHRNB2 ASH1L MIR555 BGLAP ASH1L-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR555 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR555 Gene

Chromosome:
1
Start:
155,346,350 bp from pter
End:
155,346,445 bp from pter
Size:
96 bases
Orientation:
Minus strand

Genomic View for MIR555 Gene

Genes around MIR555 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR555 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR555 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR555 Gene

ORGUL Member Location for MIR555 Gene

ORGUL Member Location for MIR555 gene

Proteins for MIR555 Gene

Post-translational modifications for MIR555 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR555 Gene

Domains & Families for MIR555 Gene

Gene Families for MIR555 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR555: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR555 Gene

Function for MIR555 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR555 Gene

Localization for MIR555 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR555 Gene

Pathways & Interactions for MIR555 Gene

genes like me logo Genes that share pathways with MIR555: view

Pathways by source for MIR555 Gene

1 BioSystems pathway for MIR555 Gene

Interacting Proteins for MIR555 Gene

Gene Ontology (GO) - Biological Process for MIR555 Gene

None

No data available for SIGNOR curated interactions for MIR555 Gene

Transcripts for MIR555 Gene

fRNAdb Secondary structures for MIR555 Gene

  • hsa-mir-555_MI0003561_Homo_sapiens_miR-555_stem-loop_hairpin

mRNA/cDNA for MIR555 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR555 Gene

No ASD Table

Relevant External Links for MIR555 Gene

GeneLoc Exon Structure for
MIR555
ECgene alternative splicing isoforms for
MIR555

Expression for MIR555 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR555 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR555 Gene:

MIR555
genes like me logo Genes that share expression patterns with MIR555: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR555 Gene

Orthologs for MIR555 Gene

Evolution for MIR555 Gene

ENSEMBL:
Gene Tree for MIR555 (if available)
TreeFam:
Gene Tree for MIR555 (if available)

No data available for Orthologs for MIR555 Gene

Paralogs for MIR555 Gene

No data available for Paralogs for MIR555 Gene

Variants for MIR555 Gene

Sequence variations from dbSNP and Humsavar for MIR555 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1003165275 -- 155,346,789(+) TTCTG(C/T)TTTCA intron-variant, upstream-variant-2KB
rs1005426256 -- 155,347,417(+) CAAAA(A/C)AAAAC intron-variant, upstream-variant-2KB
rs1005776846 -- 155,347,112(+) AGAAG(C/G)AAAGA intron-variant, upstream-variant-2KB
rs1006550544 -- 155,347,984(+) GGTAG(C/T)ATGAC intron-variant, upstream-variant-2KB
rs1006727430 -- 155,348,261(+) TCTGT(A/G)ACAGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR555 Gene

Variant ID Type Subtype PubMed ID
esv33869 CNV loss 17666407
nsv831636 CNV loss 17160897

Relevant External Links for MIR555 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR555

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR555 Gene

Disorders for MIR555 Gene

Relevant External Links for MIR555

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR555

No disorders were found for MIR555 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR555 Gene

Publications for MIR555 Gene

  1. The colorectal microRNAome. (PMID: 16505370) Cummins J.M. … Velculescu V.E. (Proc. Natl. Acad. Sci. U.S.A. 2006) 1 3 64
  2. MicroRNA-555 has potent antiviral properties against poliovirus. (PMID: 26683768) Shim B.S. … Tripp R.A. (J. Gen. Virol. 2016) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR555 Gene

Sources for MIR555 Gene

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