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Aliases for MIR550B1 Gene

Subcategory (RNA class) for MIR550B1 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR550B1 Gene

  • MicroRNA 550b-1 2 3
  • Hsa-Mir-550a-1 5
  • Hsa-Mir-550b-1 3

External Ids for MIR550B1 Gene

Previous GeneCards Identifiers for MIR550B1 Gene

  • GC07U903110

Summaries for MIR550B1 Gene

Entrez Gene Summary for MIR550B1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR550B1 Gene

MIR550B1 (MicroRNA 550b-1) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR550B1 Gene

Genomics for MIR550B1 Gene

Regulatory Elements for MIR550B1 Gene

Enhancers for MIR550B1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G030289 1.1 Ensembl ENCODE 0.7 -0.5 -487 1.6 HDAC1 TBP HDGF PKNOX1 SIN3A FOS RELB ELF4 JUNB TBX21 DKFZP586I1420 MIR550B1 GC07P030343
GH07G030317 1 Ensembl ENCODE 0.3 -30.9 -30870 6.4 BACH1 MAX FEZF1 RELA ZNF316 POLR2A SCRT2 FOS ZNF600 PRDM10 NOD1 GC07P030343 MIR550B1
GH07G030329 1 Ensembl ENCODE 0.3 -40.8 -40755 2.1 PKNOX1 ESRRA ASH2L ARID3A GATA3 EED RELB SMARCE1 MTA2 RNF2 ENSG00000223813 ZNRF2 GC07P030343 MIR550B1
GH07G030301 0.4 ENCODE 0.4 -12.0 -12030 0.2 ZNF362 NOD1 MIR550B1 GC07P030343
GH07G030310 0.5 ENCODE 0.3 -20.8 -20754 0.6 PRDM6 IKZF1 BCL6B JUNB IKZF2 MIR550A1 ZNRF2 MIR550B1 GC07P030343
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR550B1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR550B1 Gene

Chromosome:
7
Start:
30,289,794 bp from pter
End:
30,289,890 bp from pter
Size:
97 bases
Orientation:
Minus strand

Genomic View for MIR550B1 Gene

Genes around MIR550B1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR550B1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR550B1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR550B1 Gene

Proteins for MIR550B1 Gene

Post-translational modifications for MIR550B1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR550B1 Gene

Domains & Families for MIR550B1 Gene

Gene Families for MIR550B1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR550B1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR550B1 Gene

Function for MIR550B1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR550B1 Gene

Localization for MIR550B1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR550B1 Gene

Pathways & Interactions for MIR550B1 Gene

SuperPathways for MIR550B1 Gene

No Data Available

Interacting Proteins for MIR550B1 Gene

Gene Ontology (GO) - Biological Process for MIR550B1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR550B1 Gene

Drugs & Compounds for MIR550B1 Gene

No Compound Related Data Available

Transcripts for MIR550B1 Gene

mRNA/cDNA for MIR550B1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR550B1 Gene

No ASD Table

Relevant External Links for MIR550B1 Gene

GeneLoc Exon Structure for
MIR550B1
ECgene alternative splicing isoforms for
MIR550B1

Expression for MIR550B1 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR550B1 Gene:

MIR550B1
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR550B1 Gene

Orthologs for MIR550B1 Gene

Evolution for MIR550B1 Gene

ENSEMBL:
Gene Tree for MIR550B1 (if available)
TreeFam:
Gene Tree for MIR550B1 (if available)

No data available for Orthologs for MIR550B1 Gene

Paralogs for MIR550B1 Gene

No data available for Paralogs for MIR550B1 Gene

Variants for MIR550B1 Gene

Sequence variations from dbSNP and Humsavar for MIR550B1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000305971 -- 30,289,641(+) GTTAC(A/C)TGTTT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1000607538 -- 30,291,214(+) GAATG(A/G)TGAGA intron-variant, upstream-variant-2KB
rs1000642001 -- 30,290,844(+) GTATA(A/G)CATTA intron-variant, upstream-variant-2KB
rs1002403456 -- 30,290,751(+) GGATT(A/G)TAGAT intron-variant, upstream-variant-2KB
rs1002427975 -- 30,290,400(+) TAAGA(C/T)TGCAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR550B1 Gene

Variant ID Type Subtype PubMed ID
nsv1019527 CNV gain 25217958
nsv1068321 OTHER inversion 25765185
nsv1148830 OTHER inversion 26484159
nsv436557 CNV deletion 17901297
nsv981445 CNV duplication 23825009

Relevant External Links for MIR550B1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR550B1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR550B1 Gene

Disorders for MIR550B1 Gene

Relevant External Links for MIR550B1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR550B1

No disorders were found for MIR550B1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR550B1 Gene

Publications for MIR550B1 Gene

  1. Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls. (PMID: 20459774) Witten D. … Lui W.O. (BMC Biol. 2010) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR550B1 Gene

Sources for MIR550B1 Gene

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