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Aliases for MIR548Y Gene

Subcategory (RNA class) for MIR548Y Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR548Y Gene

  • MicroRNA 548y 2 3
  • Hsa-Mir-548y 3

External Ids for MIR548Y Gene

Summaries for MIR548Y Gene

Entrez Gene Summary for MIR548Y Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548Y Gene

MIR548Y (MicroRNA 548y) is an RNA Gene, and belongs to the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548Y Gene

Genomics for MIR548Y Gene

Genomic Location for MIR548Y Gene

Start:
47,760,995 bp from pter
End:
47,761,104 bp from pter
Size:
110 bases
Orientation:
Minus strand

Genomic View for MIR548Y Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR548Y Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548Y Gene

ORGUL Member Location for MIR548Y Gene

ORGUL Member Location for MIR548Y gene

No data available for Regulatory Elements for MIR548Y Gene

Proteins for MIR548Y Gene

Post-translational modifications for MIR548Y Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548Y Gene

Domains for MIR548Y Gene

Gene Families for MIR548Y Gene

HGNC:
  • MIR :ncRNAs / Micro RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548Y: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548Y Gene

Function for MIR548Y Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR548Y Gene

Localization for MIR548Y Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR548Y Gene

Pathways for MIR548Y Gene

SuperPathways for MIR548Y Gene

No Data Available

Interacting Proteins for MIR548Y Gene

Gene Ontology (GO) - Biological Process for MIR548Y Gene

None

No data available for Pathways by source for MIR548Y Gene

Transcripts for MIR548Y Gene

mRNA/cDNA for MIR548Y Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548Y Gene

No ASD Table

Relevant External Links for MIR548Y Gene

GeneLoc Exon Structure for
MIR548Y
ECgene alternative splicing isoforms for
MIR548Y

Expression for MIR548Y Gene

mRNA expression in normal human tissues for MIR548Y Gene

genes like me logo Genes that share expressions with MIR548Y: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for MIR548Y Gene

Orthologs for MIR548Y Gene

Evolution for MIR548Y Gene

ENSEMBL:
Gene Tree for MIR548Y (if available)
TreeFam:
Gene Tree for MIR548Y (if available)

No data available for Orthologs for MIR548Y Gene

Paralogs for MIR548Y Gene

No data available for Paralogs for MIR548Y Gene

Variants for MIR548Y Gene

Sequence variations from dbSNP and Humsavar for MIR548Y Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs10139167 -- 47,761,962(+) acaca(C/G)aGTGC upstream-variant-2KB
rs10645760 -- 47,761,932(+) CACAT(-/ACAC)ACACA upstream-variant-2KB
rs10679026 -- 47,760,562(+) TTTTT(-/T)GAGAC downstream-variant-500B
rs12895331 -- 47,760,741(+) gtttc(A/G)ccgtg downstream-variant-500B
rs34065755 -- 47,761,953(+) ACACA(-/AC)CACAC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR548Y Gene

Variant ID Type Subtype PubMed ID
dgv1928n71 CNV Loss 21882294
esv2661295 CNV Deletion 23128226

Relevant External Links for MIR548Y Gene

HapMap Linkage Disequilibrium report
MIR548Y

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MIR548Y Gene

Disorders for MIR548Y Gene

No disorders were found for MIR548Y Gene.

No data available for UniProtKB/Swiss-Prot for MIR548Y Gene

Publications for MIR548Y Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers. (PMID: 20498841) Liao J.Y. … Qu L.H. (PLoS ONE 2010) 3

Products for MIR548Y Gene

Sources for MIR548Y Gene

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