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Aliases for MIR548V Gene

Subcategory (RNA class) for MIR548V Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR548V Gene

  • MicroRNA 548v 2 3
  • Hsa-Mir-548v 3

External Ids for MIR548V Gene

Summaries for MIR548V Gene

Entrez Gene Summary for MIR548V Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548V Gene

MIR548V (MicroRNA 548v) is a RNA Gene, and belongs to miRNA RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548V Gene

Genomics for MIR548V Gene

Genomic Location for MIR548V Gene

Start:
17,681,578 bp from pter
End:
17,681,657 bp from pter
Size:
80 bases
Orientation:
Minus strand

Genomic View for MIR548V Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR548V Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548V Gene

No data available for Regulatory Elements for MIR548V Gene

Proteins for MIR548V Gene

Post-translational modifications for MIR548V Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548V Gene

Domains for MIR548V Gene

Gene Families for MIR548V Gene

HGNC:
  • MIR :ncRNAs / Micro RNAs
genes like me logo Genes that share domains with MIR548V: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for MIR548V Gene

Function for MIR548V Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR548V Gene

Localization for MIR548V Gene

No data available for Gene Ontology (GO) - Cellular Components for MIR548V Gene

Pathways for MIR548V Gene

SuperPathways for MIR548V Gene

No Data Available

Interacting Proteins for MIR548V Gene

Gene Ontology (GO) - Biological Process for MIR548V Gene

None

No data available for Pathways by source for MIR548V Gene

Transcripts for MIR548V Gene

mRNA/cDNA for MIR548V Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548V Gene

No ASD Table

Relevant External Links for MIR548V Gene

GeneLoc Exon Structure for
MIR548V
ECgene alternative splicing isoforms for
MIR548V

Expression for MIR548V Gene

mRNA expression in normal human tissues for MIR548V Gene

genes like me logo Genes that share expressions with MIR548V: view

Orthologs for MIR548V Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548V Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 99 (a)
OneToOne
Species with no ortholog for MIR548V:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548V Gene

ENSEMBL:
Gene Tree for MIR548V (if available)
TreeFam:
Gene Tree for MIR548V (if available)

Paralogs for MIR548V Gene

No data available for Paralogs for MIR548V Gene

Variants for MIR548V Gene

Relevant External Links for MIR548V Gene

HapMap Linkage Disequilibrium report
MIR548V

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for MIR548V Gene

Disorders for MIR548V Gene

No disorders were found for MIR548V Gene.

No data available for UniProtKB/Swiss-Prot for MIR548V Gene

Publications for MIR548V Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark M.S. … Hayward N.K. (PLoS ONE 2010) 3

Products for MIR548V Gene

Sources for MIR548V Gene

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