Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR548Q Gene

Subcategory (RNA class) for MIR548Q Gene


Quality Score for this RNA gene is


Aliases for MIR548Q Gene

  • MicroRNA 548q 2 3 5
  • Hsa-Mir-548q 3

External Ids for MIR548Q Gene

Previous GeneCards Identifiers for MIR548Q Gene

  • GC00U929744

Summaries for MIR548Q Gene

Entrez Gene Summary for MIR548Q Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548Q Gene

MIR548Q (MicroRNA 548q) is an RNA Gene, and is affiliated with the miRNA class. Diseases associated with MIR548Q include Rectal Disease.

Additional gene information for MIR548Q Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548Q Gene

Genomics for MIR548Q Gene

GeneHancer (GH) Regulatory Elements for MIR548Q Gene

Promoters and enhancers for MIR548Q Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I012263 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.1 +460.4 460398 3.6 HDGF PKNOX1 SMAD1 FOXA2 SIN3A FEZF1 YBX1 ZNF2 YY1 ZNF766 GC10P012264 CAMK1D MIR548Q UPF2 SEC61A2 GC10M012285
GH10I012240 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.3 +482.1 482081 5.2 CTCF PKNOX1 MAX EBF1 BMI1 BATF IRF4 RELA ATF7 IKZF2 CAMK1D MIR548Q NUDT5 UPF2 SEC61A2 ENSG00000228302 CDC123
GH10I012603 Enhancer 1.3 Ensembl ENCODE dbSUPER 10.7 +120.1 120108 4.1 CLOCK FOXA2 NEUROD1 SIN3A YY1 RXRA REST KAT8 NFIL3 RCOR2 MIR548Q GC10M012628 MIR4480 CAMK1D
GH10I012500 Enhancer 1.2 FANTOM5 Ensembl ENCODE 10.5 +223.8 223801 1.2 KLF1 FOXA2 MZF1 ZNF2 ZNF766 ZNF302 ZNF366 ZBTB48 ADNP ZSCAN5C ENSG00000228330 ENSG00000252438 SEPHS1 CAMK1D MIR548Q SEC61A2 GC10P012490 GC10P012491 GC10P012540
GH10I012483 Enhancer 1.2 FANTOM5 Ensembl ENCODE 10.2 +240.4 240377 2.4 HDGF CTCF RB1 ETV1 EBF1 KLF5 RAD21 RELA POLR2A ZNF143 CAMK1D RNU6ATAC39P ENSG00000228302 MIR548Q GC10P012490 GC10P012491
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR548Q on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR548Q Gene

Genomic Locations for MIR548Q Gene
100 bases
Minus strand

Genomic View for MIR548Q Gene

Genes around MIR548Q on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548Q Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548Q Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548Q Gene

ORGUL Member Location for MIR548Q Gene

ORGUL Member Location for MIR548Q gene

Proteins for MIR548Q Gene

Post-translational modifications for MIR548Q Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548Q Gene

Domains & Families for MIR548Q Gene

Gene Families for MIR548Q Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548Q: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548Q Gene

Function for MIR548Q Gene

Phenotypes From GWAS Catalog for MIR548Q Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548Q Gene

Localization for MIR548Q Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR548Q Gene

Pathways & Interactions for MIR548Q Gene

SuperPathways for MIR548Q Gene

No Data Available

Interacting Proteins for MIR548Q Gene

Gene Ontology (GO) - Biological Process for MIR548Q Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR548Q Gene

Drugs & Compounds for MIR548Q Gene

No Compound Related Data Available

Transcripts for MIR548Q Gene

mRNA/cDNA for MIR548Q Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548Q Gene

No ASD Table

Relevant External Links for MIR548Q Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR548Q Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR548Q Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR548Q Gene:

genes like me logo Genes that share expression patterns with MIR548Q: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR548Q Gene

Orthologs for MIR548Q Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548Q Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia -- 34
  • 97 (a)
Species where no ortholog for MIR548Q was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548Q Gene

Gene Tree for MIR548Q (if available)
Gene Tree for MIR548Q (if available)

Paralogs for MIR548Q Gene

No data available for Paralogs for MIR548Q Gene

Variants for MIR548Q Gene

Sequence variations from dbSNP and Humsavar for MIR548Q Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000185186 -- 12,726,535(-) AAAA/AA upstream_transcript_variant
rs1002622198 -- 12,724,947(-) T/C downstream_transcript_variant
rs1004666819 -- 12,725,873(-) C/T upstream_transcript_variant
rs1004710580 -- 12,726,153(-) C/T upstream_transcript_variant
rs1005928482 -- 12,727,152(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR548Q Gene

Variant ID Type Subtype PubMed ID
esv3622363 CNV gain 21293372

Additional Variant Information for MIR548Q Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR548Q Gene

Disorders for MIR548Q Gene

MalaCards: The human disease database

(1) MalaCards diseases for MIR548Q Gene - From: DISEASES

Disorder Aliases PubMed IDs
rectal disease
  • rectal disorders
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for MIR548Q

genes like me logo Genes that share disorders with MIR548Q: view

No data available for UniProtKB/Swiss-Prot and Genatlas for MIR548Q Gene

Publications for MIR548Q Gene

  1. Repertoire of microRNAs in epithelial ovarian cancer as determined by next generation sequencing of small RNA cDNA libraries. (PMID: 19390579) Wyman SK … Tewari M (PloS one 2009) 3 58
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR548Q Gene

Sources for MIR548Q Gene

Loading form....