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Aliases for MIR548O2 Gene

Subcategory (RNA class) for MIR548O2 Gene


Quality Score for this RNA gene is


Aliases for MIR548O2 Gene

  • MicroRNA 548o-2 2 3 5
  • Hsa-Mir-548o-2 3

External Ids for MIR548O2 Gene

Previous GeneCards Identifiers for MIR548O2 Gene

  • GC20U900697
  • GC20P037146

Summaries for MIR548O2 Gene

Entrez Gene Summary for MIR548O2 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548O2 Gene

MIR548O2 (MicroRNA 548o-2) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548O2 Gene

Genomics for MIR548O2 Gene

Regulatory Elements for MIR548O2 Gene

Enhancers for MIR548O2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F038519 0.6 VISTA 0.8 +3.9 3864 1.4 CEBPB SNHG11 SNORA60 ENSG00000201811 SNHG17 SNORA71D SNORA71C MIR548O2 RPS3P2
GH20F038536 0.2 ENCODE 0.3 +20.0 20047 1.2 CTCF ZNF316 ZNF146 ADIG ARHGAP40 ENSG00000224635 RPS3P2 MIR548O2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR548O2 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR548O2 Gene

38,516,563 bp from pter
38,516,632 bp from pter
70 bases
Plus strand

Genomic View for MIR548O2 Gene

Genes around MIR548O2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548O2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548O2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548O2 Gene

Proteins for MIR548O2 Gene

Post-translational modifications for MIR548O2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548O2 Gene

Domains & Families for MIR548O2 Gene

Gene Families for MIR548O2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548O2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548O2 Gene

Function for MIR548O2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548O2 Gene

Localization for MIR548O2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR548O2 Gene

Pathways & Interactions for MIR548O2 Gene

SuperPathways for MIR548O2 Gene

No Data Available

Interacting Proteins for MIR548O2 Gene

Gene Ontology (GO) - Biological Process for MIR548O2 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR548O2 Gene

Transcripts for MIR548O2 Gene

mRNA/cDNA for MIR548O2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548O2 Gene

No ASD Table

Relevant External Links for MIR548O2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR548O2 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR548O2 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR548O2 Gene

Orthologs for MIR548O2 Gene

Evolution for MIR548O2 Gene

Gene Tree for MIR548O2 (if available)
Gene Tree for MIR548O2 (if available)

No data available for Orthologs for MIR548O2 Gene

Paralogs for MIR548O2 Gene

No data available for Paralogs for MIR548O2 Gene

Variants for MIR548O2 Gene

Sequence variations from dbSNP and Humsavar for MIR548O2 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs113883801 -- 38,515,126(+) TACAG(C/T)CCCCA intron-variant, upstream-variant-2KB
rs118032198 -- 38,516,932(+) ACTTA(C/T)TAATG intron-variant, downstream-variant-500B
rs139233646 -- 38,514,592(+) TGGCA(A/G)ATTTC intron-variant, upstream-variant-2KB
rs139724757 -- 38,516,445(+) AGTTA(C/T)TAGAA intron-variant, upstream-variant-2KB
rs142489071 -- 38,516,224(+) TATTA(C/G/T)AAGCT nc-transcript-variant, upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for MIR548O2 Gene

Variant ID Type Subtype PubMed ID
nsv1058457 CNV loss 25217958

Relevant External Links for MIR548O2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR548O2 Gene

Disorders for MIR548O2 Gene

Relevant External Links for MIR548O2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR548O2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548O2 Gene

Publications for MIR548O2 Gene

  1. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. (PMID: 20733160) Jima D.D. … Dave S.S. (Blood 2010) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR548O2 Gene

Sources for MIR548O2 Gene

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