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Aliases for MIR548O Gene

Subcategory (RNA class) for MIR548O Gene


Quality Score for this RNA gene is


Aliases for MIR548O Gene

  • MicroRNA 548o 2 3 5
  • Hsa-Mir-548o 3
  • MIRN548O 3

External Ids for MIR548O Gene

Previous HGNC Symbols for MIR548O Gene

  • MIRN548O

Previous GeneCards Identifiers for MIR548O Gene

  • GC00U923117
  • GC07M101834
  • GC07M102046

Summaries for MIR548O Gene

Entrez Gene Summary for MIR548O Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548O Gene

MIR548O (MicroRNA 548o) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548O Gene

Genomics for MIR548O Gene

Regulatory Elements for MIR548O Gene

Enhancers for MIR548O Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F102439 1.3 Ensembl ENCODE 12.6 -35.9 -35880 4.2 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ZNF143 FOS REST TBX21 MEF2D PRKRIP1 MIR548O POLR2J ENSG00000239480 PIR32382
GH07F102444 0.9 ENCODE 12.6 -39.4 -39351 1.2 HDGF PKNOX1 CBX3 CHAMP1 ZNF366 ELK1 CREM EGR2 USF2 ZEB2 ORAI2 POLR2J MIR548O PRKRIP1 UPK3BL ENSG00000239480 PIR32382
GH07F102470 0.5 ENCODE 13.1 -64.8 -64774 0.2 CTCF PRDM10 ZNF623 YY1 MIR548O PRKRIP1 GC07P102474 PIR59829 GC07P102467 PIR43748
GH07F102381 0.4 ENCODE 12.6 +24.2 24172 0.2 JUND SIN3A MIR548O SH2B2 ENSG00000239486 ENSG00000239969
GH07F102380 0.2 ENCODE 12.6 +24.8 24787 0.2 MIR548O SH2B2 ENSG00000239486 ENSG00000239969
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR548O on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR548O Gene

102,405,742 bp from pter
102,405,855 bp from pter
114 bases
Minus strand

Genomic View for MIR548O Gene

Genes around MIR548O on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548O Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548O Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548O Gene

ORGUL Member Location for MIR548O Gene

ORGUL Member Location for MIR548O gene

Proteins for MIR548O Gene

Post-translational modifications for MIR548O Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548O Gene

Domains & Families for MIR548O Gene

Gene Families for MIR548O Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548O: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548O Gene

Function for MIR548O Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548O Gene

Localization for MIR548O Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR548O Gene

Pathways & Interactions for MIR548O Gene

SuperPathways for MIR548O Gene

No Data Available

Interacting Proteins for MIR548O Gene

Gene Ontology (GO) - Biological Process for MIR548O Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR548O Gene

Transcripts for MIR548O Gene

mRNA/cDNA for MIR548O Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548O Gene

No ASD Table

Relevant External Links for MIR548O Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR548O Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR548O Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR548O Gene:

genes like me logo Genes that share expression patterns with MIR548O: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR548O Gene

Orthologs for MIR548O Gene

Evolution for MIR548O Gene

Gene Tree for MIR548O (if available)
Gene Tree for MIR548O (if available)

No data available for Orthologs for MIR548O Gene

Paralogs for MIR548O Gene

No data available for Paralogs for MIR548O Gene

Variants for MIR548O Gene

Sequence variations from dbSNP and Humsavar for MIR548O Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10243209 -- 102,405,881(+) tataa(C/T)gtaaa intron-variant, upstream-variant-2KB
rs10262517 -- 102,406,592(+) gagga(A/T)cagct intron-variant, upstream-variant-2KB
rs112979436 -- 102,406,580(+) ATGTA(A/G)TTGTA intron-variant, upstream-variant-2KB
rs113670761 -- 102,405,998(+) GTAGT(C/T)GGTTG intron-variant, upstream-variant-2KB
rs113694614 -- 102,407,013(+) ATCGA(C/G)ACCAT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR548O Gene

Variant ID Type Subtype PubMed ID
nsv831083 CNV loss 17160897
nsv607998 CNV gain+loss 21841781
nsv464665 CNV loss 19166990
nsv464664 CNV gain 19166990
nsv428182 CNV gain 18775914
esv2759548 CNV gain 17122850
dgv6538n100 CNV gain 25217958

Relevant External Links for MIR548O Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR548O Gene

Disorders for MIR548O Gene

Relevant External Links for MIR548O

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR548O Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548O Gene

Publications for MIR548O Gene

  1. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin R.D. … Marra M.A. (Genome Res. 2008) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR548O Gene

Sources for MIR548O Gene

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