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Aliases for MIR548N Gene

Subcategory (RNA class) for MIR548N Gene


Quality Score for this RNA gene is


Aliases for MIR548N Gene

  • MicroRNA 548n 2 3 5
  • Hsa-Mir-548n 3
  • MIRN548N 3

External Ids for MIR548N Gene

Previous HGNC Symbols for MIR548N Gene

  • MIRN548N

Previous GeneCards Identifiers for MIR548N Gene

  • GC00U923003
  • GC09P017593

Summaries for MIR548N Gene

Entrez Gene Summary for MIR548N Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548N Gene

MIR548N (MicroRNA 548n) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548N Gene

Genomics for MIR548N Gene

Regulatory Elements for MIR548N Gene

Enhancers for MIR548N Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around MIR548N on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR548N Gene

34,940,760 bp from pter
34,940,834 bp from pter
75 bases
Minus strand

Genomic View for MIR548N Gene

Genes around MIR548N on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548N Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548N Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548N Gene

Proteins for MIR548N Gene

Post-translational modifications for MIR548N Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548N Gene

Domains & Families for MIR548N Gene

Gene Families for MIR548N Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548N: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548N Gene

Function for MIR548N Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548N Gene

Localization for MIR548N Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR548N Gene

Pathways & Interactions for MIR548N Gene

SuperPathways for MIR548N Gene

No Data Available

Interacting Proteins for MIR548N Gene

Gene Ontology (GO) - Biological Process for MIR548N Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR548N Gene

Drugs & Compounds for MIR548N Gene

No Compound Related Data Available

Transcripts for MIR548N Gene

mRNA/cDNA for MIR548N Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548N Gene

No ASD Table

Relevant External Links for MIR548N Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR548N Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for MIR548N Gene

Orthologs for MIR548N Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548N Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ptr-mir-548n 36
  • 93 (a)
Species with no ortholog for MIR548N:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548N Gene

Gene Tree for MIR548N (if available)
Gene Tree for MIR548N (if available)

Paralogs for MIR548N Gene

No data available for Paralogs for MIR548N Gene

Variants for MIR548N Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR548N Gene

Variant ID Type Subtype PubMed ID
nsv834466 CNV Gain 17160897
nsv834467 CNV Loss 17160897
nsv820287 CNV Loss 19587683
nsv821814 CNV Loss 20364138
nsv821160 CNV Duplication 20802225
dgv679n67 CNV Gain 20364138
nsv821827 CNV Gain 20364138
esv24835 CNV Loss 19812545
esv2721190 CNV Deletion 23290073
dgv668e201 CNV Deletion 23290073
esv8989 CNV Loss 19470904
esv7371 CNV Loss 19470904
esv2721191 CNV Deletion 23290073
esv2721192 CNV Deletion 23290073
nsv819460 CNV Loss 19587683
esv9296 CNV Loss 19470904
esv2721193 CNV Deletion 23290073
esv2721194 CNV Deletion 23290073
nsv819025 CNV Loss 19587683
esv2721196 CNV Deletion 23290073
esv8450 CNV Loss 19470904
nsv834468 CNV Gain 17160897
esv1002693 CNV Deletion 20482838
nsv522036 CNV Gain 19592680
dgv1275e1 CNV Complex 17122850
nsv3058 CNV Insertion 18451855
nsv10202 CNV Loss 18304495
esv26878 CNV Loss 19812545
nsv821308 CNV Duplication 20802225

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Variation tolerance and Relevant External Links for MIR548N Gene

Disorders for MIR548N Gene

Relevant External Links for MIR548N

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR548N Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548N Gene

Publications for MIR548N Gene

  1. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin R.D. … Marra M.A. (Genome Res. 2008) 3 67
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3

Products for MIR548N Gene

Sources for MIR548N Gene