Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR548J Gene

Subcategory (RNA class) for MIR548J Gene


Quality Score for this RNA gene is


Aliases for MIR548J Gene

  • MicroRNA 548j 2 3
  • Hsa-Mir-548j 3
  • MIRN548J 3

External Ids for MIR548J Gene

Previous HGNC Symbols for MIR548J Gene

  • MIRN548J

Previous GeneCards Identifiers for MIR548J Gene

  • GC00U922841
  • GC22M025282
  • GC22M026951

Summaries for MIR548J Gene

Entrez Gene Summary for MIR548J Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Nov 2009]

GeneCards Summary for MIR548J Gene

MIR548J (MicroRNA 548j) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548J Gene

Genomics for MIR548J Gene

Genomic Location for MIR548J Gene

26,555,212 bp from pter
26,555,323 bp from pter
112 bases
Minus strand

Genomic View for MIR548J Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR548J Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548J Gene

ORGUL Member Location for MIR548J Gene

ORGUL Member Location for MIR548J gene

No data available for Regulatory Elements for MIR548J Gene

Proteins for MIR548J Gene

Post-translational modifications for MIR548J Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548J Gene

Domains for MIR548J Gene

Gene Families for MIR548J Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548J: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548J Gene

Function for MIR548J Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548J Gene

Localization for MIR548J Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR548J Gene

Pathways for MIR548J Gene

SuperPathways for MIR548J Gene

No Data Available

Interacting Proteins for MIR548J Gene

Gene Ontology (GO) - Biological Process for MIR548J Gene


No data available for Pathways by source for MIR548J Gene

Transcripts for MIR548J Gene

mRNA/cDNA for MIR548J Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548J Gene

No ASD Table

Relevant External Links for MIR548J Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR548J Gene

mRNA expression in normal human tissues for MIR548J Gene

genes like me logo Genes that share expressions with MIR548J: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for MIR548J Gene

Orthologs for MIR548J Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548J Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ptr-mir-548j 36
  • 98 (a)
Species with no ortholog for MIR548J:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548J Gene

Gene Tree for MIR548J (if available)
Gene Tree for MIR548J (if available)

Paralogs for MIR548J Gene

No data available for Paralogs for MIR548J Gene

Variants for MIR548J Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR548J Gene

Variant ID Type Subtype PubMed ID
nsv7350 OTHER Inversion 18451855
dgv1397e1 CNV Complex 17122850

Relevant External Links for MIR548J Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for MIR548J Gene

Disorders for MIR548J Gene

No disorders were found for MIR548J Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for MIR548J Gene

Publications for MIR548J Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin R.D. … Marra M.A. (Genome Res. 2008) 3
  3. miR-1279, miR-548j, miR-548m, and miR-548d-5p binding sites in CDSs of paralogous and orthologous PTPN12, MSH6, and ZEB1 Genes. (PMID: 23957009) Ivashchenko A.T. … Berillo O.A. (Biomed Res Int 2013) 3

Products for MIR548J Gene

Sources for MIR548J Gene

Back to Top