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Aliases for MIR548I3 Gene

Subcategory (RNA class) for MIR548I3 Gene


Quality Score for this RNA gene is


Aliases for MIR548I3 Gene

  • MicroRNA 548i-3 2 3
  • Hsa-Mir-548i-3 3
  • Mir-548i-3 3
  • MIR548I-3 3
  • MIRN548I3 3

External Ids for MIR548I3 Gene

Previous HGNC Symbols for MIR548I3 Gene

  • MIRN548I3

Previous GeneCards Identifiers for MIR548I3 Gene

  • GC00U923031
  • GC08M007984
  • GC08M007946

Summaries for MIR548I3 Gene

Entrez Gene Summary for MIR548I3 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548I3 Gene

MIR548I3 (MicroRNA 548i-3) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548I3 Gene

Genomics for MIR548I3 Gene

Genomic Location for MIR548I3 Gene

8,088,941 bp from pter
8,089,089 bp from pter
149 bases
Minus strand

Genomic View for MIR548I3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR548I3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548I3 Gene

ORGUL Member Location for MIR548I3 Gene

ORGUL Member Location for MIR548I3 gene

No data available for Regulatory Elements for MIR548I3 Gene

Proteins for MIR548I3 Gene

Post-translational modifications for MIR548I3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548I3 Gene

Domains & Families for MIR548I3 Gene

Gene Families for MIR548I3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548I3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548I3 Gene

Function for MIR548I3 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548I3 Gene

Localization for MIR548I3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR548I3 Gene

Pathways & Interactions for MIR548I3 Gene

SuperPathways for MIR548I3 Gene

No Data Available

Interacting Proteins for MIR548I3 Gene

Gene Ontology (GO) - Biological Process for MIR548I3 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR548I3 Gene

Drugs & Compounds for MIR548I3 Gene

No Compound Related Data Available

Transcripts for MIR548I3 Gene

mRNA/cDNA for MIR548I3 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548I3 Gene

No ASD Table

Relevant External Links for MIR548I3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR548I3 Gene

mRNA expression in normal human tissues for MIR548I3 Gene

genes like me logo Genes that share expression patterns with MIR548I3: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for MIR548I3 Gene

Orthologs for MIR548I3 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548I3 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ptr-mir-548i-4 36
  • 84 (a)
Species with no ortholog for MIR548I3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548I3 Gene

Gene Tree for MIR548I3 (if available)
Gene Tree for MIR548I3 (if available)

Paralogs for MIR548I3 Gene

No data available for Paralogs for MIR548I3 Gene

Variants for MIR548I3 Gene

Sequence variations from dbSNP and Humsavar for MIR548I3 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs4436130 -- 8,088,488(+) GGGTC(C/T)TGATG downstream-variant-500B
rs4436131 -- 8,088,524(+) GCATG(A/C)AGAAT downstream-variant-500B
rs10090808 -- 8,090,477(+) tagcc(C/T)gaagc upstream-variant-2KB
rs10107841 -- 8,090,454(+) gcaga(A/G)gtgca upstream-variant-2KB
rs112670981 -- 8,088,546(+) TTCAA(A/G)AGGTG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for MIR548I3 Gene

Variant ID Type Subtype PubMed ID
nsv428194 CNV Gain+Loss 18775914
dgv2191e1 CNV Complex 17122850
nsv515968 CNV Gain+Loss 19592680
nsv821656 CNV Gain 15273396
dgv2192e1 CNV Complex 17122850
nsv510977 CNV Complex 20534489
dgv7659n71 CNV Gain 21882294
dgv7662n71 CNV Gain 21882294
nsv471650 CNV Gain+Loss 15918152
dgv2195e1 CNV Complex 17122850
esv2752265 CNV Gain 17911159
esv2752266 CNV Loss 17911159
esv25631 CNV Gain+Loss 19812545
dgv7686n71 CNV Gain 21882294
nsv471651 CNV Gain+Loss 15918152
nsv469790 CNV Loss 16826518
essv20225 CNV CNV 17122850
nsv890323 CNV Gain 21882294
dgv7698n71 CNV Gain 21882294
nsv469850 CNV Complex 16826518
essv21038 CNV CNV 17122850
nsv820854 CNV Deletion 20802225

Relevant External Links for MIR548I3 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR548I3 Gene

Disorders for MIR548I3 Gene

Relevant External Links for MIR548I3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with MIR548I3: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548I3 Gene

Publications for MIR548I3 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 67
  2. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin R.D. … Marra M.A. (Genome Res. 2008) 67
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 67

Products for MIR548I3 Gene

Sources for MIR548I3 Gene

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