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Aliases for MIR548H5 Gene

Subcategory (RNA class) for MIR548H5 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR548H5 Gene

  • MicroRNA 548h-5 2 3
  • Hsa-Mir-548h-5 3

External Ids for MIR548H5 Gene

Summaries for MIR548H5 Gene

Entrez Gene Summary for MIR548H5 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548H5 Gene

MIR548H5 (MicroRNA 548h-5) is a RNA Gene, and belongs to miRNA RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548H5 Gene

Genomics for MIR548H5 Gene

Genomic Location for MIR548H5 Gene

Start:
131,792,172 bp from pter
End:
131,792,231 bp from pter
Size:
60 bases
Orientation:
Plus strand

Genomic View for MIR548H5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR548H5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548H5 Gene

No data available for Regulatory Elements for MIR548H5 Gene

Proteins for MIR548H5 Gene

Post-translational modifications for MIR548H5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548H5 Gene

Domains for MIR548H5 Gene

Gene Families for MIR548H5 Gene

HGNC:
  • MIR :ncRNAs / Micro RNAs
genes like me logo Genes that share domains with MIR548H5: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for MIR548H5 Gene

Function for MIR548H5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR548H5 Gene

Localization for MIR548H5 Gene

No data available for Gene Ontology (GO) - Cellular Components for MIR548H5 Gene

Pathways for MIR548H5 Gene

SuperPathways for MIR548H5 Gene

No Data Available

Interacting Proteins for MIR548H5 Gene

Gene Ontology (GO) - Biological Process for MIR548H5 Gene

None

No data available for Pathways by source for MIR548H5 Gene

Transcripts for MIR548H5 Gene

mRNA/cDNA for MIR548H5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548H5 Gene

No ASD Table

Relevant External Links for MIR548H5 Gene

GeneLoc Exon Structure for
MIR548H5
ECgene alternative splicing isoforms for
MIR548H5

Expression for MIR548H5 Gene

No Expression Related Data Available

Orthologs for MIR548H5 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548H5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 100 (a)
OneToOne
Species with no ortholog for MIR548H5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548H5 Gene

ENSEMBL:
Gene Tree for MIR548H5 (if available)
TreeFam:
Gene Tree for MIR548H5 (if available)

Paralogs for MIR548H5 Gene

No data available for Paralogs for MIR548H5 Gene

Variants for MIR548H5 Gene

Sequence variations from dbSNP and Humsavar for MIR548H5 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs3850253 -- 131,791,393(-) CATTG(C/T)CTCTG upstream-variant-2KB
rs3850254 -- 131,791,606(-) GTTAG(C/T)GCTTC upstream-variant-2KB
rs7451270 -- 131,790,562(+) tacac(A/G)tacac upstream-variant-2KB
rs7451290 -- 131,790,561(+) gtaca(C/T)ataca upstream-variant-2KB
rs7451296 -- 131,790,617(+) atgta(C/T)atata upstream-variant-2KB

Relevant External Links for MIR548H5 Gene

HapMap Linkage Disequilibrium report
MIR548H5

No data available for Structural Variations from Database of Genomic Variants (DGV) for MIR548H5 Gene

Disorders for MIR548H5 Gene

No disorders were found for MIR548H5 Gene.

No data available for UniProtKB/Swiss-Prot for MIR548H5 Gene

Publications for MIR548H5 Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. (PMID: 20733160) Jima D.D. … Dave S.S. (Blood 2010) 3

Products for MIR548H5 Gene

Sources for MIR548H5 Gene

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