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Aliases for MIR548H2 Gene

Subcategory (RNA class) for MIR548H2 Gene


Quality Score for this RNA gene is


Aliases for MIR548H2 Gene

  • MicroRNA 548h-2 2 3 5
  • Hsa-Mir-548h-2 3
  • MIR548H-2 3
  • MIRN548H2 3

External Ids for MIR548H2 Gene

Previous HGNC Symbols for MIR548H2 Gene

  • MIRN548H2

Previous GeneCards Identifiers for MIR548H2 Gene

  • GC00U923033
  • GC16M011308
  • GC16M011400

Summaries for MIR548H2 Gene

Entrez Gene Summary for MIR548H2 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548H2 Gene

MIR548H2 (MicroRNA 548h-2) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548H2 Gene

Genomics for MIR548H2 Gene

Regulatory Elements for MIR548H2 Gene

Enhancers for MIR548H2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F011302 0.9 Ensembl ENCODE 0.8 +3.0 2995 2.0 MLX ARID4B SIN3A DMAP1 ZNF2 ZNF48 ZNF121 SLC30A9 ZNF143 ZNF263 RMI2 LOC105371083 MIR548H2 PIR58691
GH16F011305 0.2 Ensembl 0.8 +1.2 1227 0.6 SREBF1 MNT MIR548H2 PIR58691
GH16F011296 1.6 FANTOM5 Ensembl ENCODE 0.4 +8.3 8277 4.2 HDGF PKNOX1 MLX WRNIP1 ARID4B YBX1 DMAP1 ZNF207 SP5 JUNB RMI2 SOCS1 PRM2 ENSG00000212228 PRM3 TNP2 CLEC16A DEXI LOC105371083 CIITA
GH16F011306 1.5 FANTOM5 Ensembl ENCODE 0.4 -5.4 -5362 10.7 HDGF PKNOX1 MLX WRNIP1 ZFP64 ARID4B YBX1 DMAP1 ZNF2 YY1 RMI2 NUBP1 GSPT1 COX6CP1 LOC105371084 LOC105371083 SOCS1 ENSG00000199668 MIR548H2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR548H2 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR548H2 Gene

11,306,440 bp from pter
11,306,527 bp from pter
88 bases
Minus strand

Genomic View for MIR548H2 Gene

Genes around MIR548H2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548H2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548H2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548H2 Gene

ORGUL Member Location for MIR548H2 Gene

ORGUL Member Location for MIR548H2 gene

Proteins for MIR548H2 Gene

Post-translational modifications for MIR548H2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548H2 Gene

Domains & Families for MIR548H2 Gene

Gene Families for MIR548H2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548H2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548H2 Gene

Function for MIR548H2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548H2 Gene

Localization for MIR548H2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR548H2 Gene

Pathways & Interactions for MIR548H2 Gene

SuperPathways for MIR548H2 Gene

No Data Available

Interacting Proteins for MIR548H2 Gene

Gene Ontology (GO) - Biological Process for MIR548H2 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR548H2 Gene

Transcripts for MIR548H2 Gene

mRNA/cDNA for MIR548H2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548H2 Gene

No ASD Table

Relevant External Links for MIR548H2 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR548H2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR548H2 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR548H2 Gene:

genes like me logo Genes that share expression patterns with MIR548H2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR548H2 Gene

Orthologs for MIR548H2 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548H2 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia -- 35
  • 99 (a)
Species where no ortholog for MIR548H2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548H2 Gene

Gene Tree for MIR548H2 (if available)
Gene Tree for MIR548H2 (if available)

Paralogs for MIR548H2 Gene

No data available for Paralogs for MIR548H2 Gene

Variants for MIR548H2 Gene

Sequence variations from dbSNP and Humsavar for MIR548H2 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs111512475 -- 11,306,999(+) GTGGG(C/T)GTCTG intron-variant, upstream-variant-2KB
rs111965823 -- 11,308,155(+) GGGCG(A/T)GTTTC intron-variant, upstream-variant-2KB
rs113371353 -- 11,308,136(+) CCACA(A/G)TATGG intron-variant, upstream-variant-2KB
rs117337883 -- 11,306,547(+) TGAAC(A/G)CTTGG intron-variant, upstream-variant-2KB
rs117776083 -- 11,308,499(+) CCTGG(C/G)CCACA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR548H2 Gene

Variant ID Type Subtype PubMed ID
nsv1040428 CNV gain 25217958
nsv571454 CNV loss 21841781

Relevant External Links for MIR548H2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR548H2 Gene

Disorders for MIR548H2 Gene

Relevant External Links for MIR548H2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR548H2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548H2 Gene

Publications for MIR548H2 Gene

  1. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin R.D. … Marra M.A. (Genome Res. 2008) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR548H2 Gene

Sources for MIR548H2 Gene

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