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Aliases for MIR548H1 Gene

Subcategory (RNA class) for MIR548H1 Gene


Quality Score for this RNA gene is


Aliases for MIR548H1 Gene

  • MicroRNA 548h-1 2 3 5
  • Hsa-Mir-548h-1 3
  • MIR548H-1 3
  • MIRN548H1 3

External Ids for MIR548H1 Gene

Previous HGNC Symbols for MIR548H1 Gene

  • MIRN548H1

Previous GeneCards Identifiers for MIR548H1 Gene

  • GC00U923129
  • GC14M063632
  • GC14M064561

Summaries for MIR548H1 Gene

Entrez Gene Summary for MIR548H1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548H1 Gene

MIR548H1 (MicroRNA 548h-1) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548H1 Gene

Genomics for MIR548H1 Gene

Regulatory Elements for MIR548H1 Gene

Enhancers for MIR548H1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F064074 0.5 ENCODE 12.9 +20.1 20057 1.1 OSR2 ZNF202 JUND JUN CEBPB FOS PRDM1 EP300 BCL11B MIR548H1 LOC102723809 ZBTB25 ENSG00000214770 GCATP1 WDR89 SYNE2 ENSG00000202182 ZBTB1 GC14P064073
GH14F064116 1.1 FANTOM5 Ensembl ENCODE 11.9 -23.2 -23180 3.1 CTCF ATF3 ZBTB33 RAD21 YY1 MIR548H1 ESR2 GC14M064162
GH14F064059 0.8 Ensembl ENCODE 11.5 +34.5 34506 2.8 CTCF TEAD4 MAX MNT REST RAD21 POLR2A CTBP2 PRDM10 KDM1A MIR548H1 RAB15 GC14P064073 SYNE2
GH14F064146 1.1 ENCODE 11.2 -52.2 -52171 1.2 MIR548H1 ESR2 GC14M064162
GH14F063937 0.9 Ensembl ENCODE 10.4 +156.7 156703 1.8 HDGF PKNOX1 EBF1 YY1 ATF3 TARDBP EED IKZF1 HNF4G NBN SYNE2 ENSG00000202182 MIR548H1 GC14P064073
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR548H1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR548H1 Gene

64,095,024 bp from pter
64,095,125 bp from pter
102 bases
Minus strand

Genomic View for MIR548H1 Gene

Genes around MIR548H1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548H1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548H1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548H1 Gene

ORGUL Member Location for MIR548H1 Gene

ORGUL Member Location for MIR548H1 gene

Proteins for MIR548H1 Gene

Post-translational modifications for MIR548H1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548H1 Gene

Domains & Families for MIR548H1 Gene

Gene Families for MIR548H1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548H1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548H1 Gene

Function for MIR548H1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548H1 Gene

Localization for MIR548H1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR548H1 Gene

Pathways & Interactions for MIR548H1 Gene

SuperPathways for MIR548H1 Gene

No Data Available

Interacting Proteins for MIR548H1 Gene

Gene Ontology (GO) - Biological Process for MIR548H1 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR548H1 Gene

Transcripts for MIR548H1 Gene

mRNA/cDNA for MIR548H1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548H1 Gene

No ASD Table

Relevant External Links for MIR548H1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR548H1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR548H1 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR548H1 Gene:

genes like me logo Genes that share expression patterns with MIR548H1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR548H1 Gene

Orthologs for MIR548H1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548H1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ptr-mir-548h 35
  • 99 (a)
Species where no ortholog for MIR548H1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548H1 Gene

Gene Tree for MIR548H1 (if available)
Gene Tree for MIR548H1 (if available)

Paralogs for MIR548H1 Gene

No data available for Paralogs for MIR548H1 Gene

Variants for MIR548H1 Gene

Sequence variations from dbSNP and Humsavar for MIR548H1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs10136633 -- 64,095,477(+) taggc(A/C)gatct intron-variant, upstream-variant-2KB
rs114381097 -- 64,095,583(+) GCAAT(A/G)CAGTT intron-variant, upstream-variant-2KB
rs115703723 -- 64,096,665(+) TAGGG(A/G)TATTG intron-variant, upstream-variant-2KB
rs116339884 -- 64,096,489(+) CCTCT(A/G)CTCTG intron-variant, upstream-variant-2KB
rs117011000 -- 64,096,894(+) CATAA(C/T)AAGGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR548H1 Gene

Variant ID Type Subtype PubMed ID
esv2748779 CNV deletion 23290073
nsv456326 CNV gain 19166990
nsv564905 CNV gain 21841781

Relevant External Links for MIR548H1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR548H1 Gene

Disorders for MIR548H1 Gene

Relevant External Links for MIR548H1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR548H1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548H1 Gene

Publications for MIR548H1 Gene

  1. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin R.D. … Marra M.A. (Genome Res. 2008) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR548H1 Gene

Sources for MIR548H1 Gene

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