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Aliases for MIR548G Gene

Subcategory (RNA class) for MIR548G Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR548G Gene

  • MicroRNA 548g 2 3
  • Hsa-Mir-548g 3
  • MIRN548G 3

External Ids for MIR548G Gene

Previous HGNC Symbols for MIR548G Gene

  • MIRN548G

Previous GeneCards Identifiers for MIR548G Gene

  • GC00U923152
  • GC04M148486
  • GC04M148265

Summaries for MIR548G Gene

Entrez Gene Summary for MIR548G Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Nov 2009]

GeneCards Summary for MIR548G Gene

MIR548G (MicroRNA 548g) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548G Gene

Genomics for MIR548G Gene

Genomic Location for MIR548G Gene

Start:
147,344,629 bp from pter
End:
147,344,717 bp from pter
Size:
89 bases
Orientation:
Minus strand

Genomic View for MIR548G Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR548G Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548G Gene

ORGUL Member Location for MIR548G Gene

ORGUL Member Location for MIR548G gene

No data available for Regulatory Elements for MIR548G Gene

Proteins for MIR548G Gene

Post-translational modifications for MIR548G Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548G Gene

Domains for MIR548G Gene

Gene Families for MIR548G Gene

HGNC:
  • MIR :ncRNAs / Micro RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548G: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548G Gene

Function for MIR548G Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR548G Gene

Localization for MIR548G Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR548G Gene

Pathways for MIR548G Gene

SuperPathways for MIR548G Gene

No Data Available

Interacting Proteins for MIR548G Gene

Gene Ontology (GO) - Biological Process for MIR548G Gene

None

No data available for Pathways by source for MIR548G Gene

Transcripts for MIR548G Gene

mRNA/cDNA for MIR548G Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548G Gene

No ASD Table

Relevant External Links for MIR548G Gene

GeneLoc Exon Structure for
MIR548G
ECgene alternative splicing isoforms for
MIR548G

Expression for MIR548G Gene

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for MIR548G Gene

Orthologs for MIR548G Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548G Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 99 (a)
OneToOne
Species with no ortholog for MIR548G:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548G Gene

ENSEMBL:
Gene Tree for MIR548G (if available)
TreeFam:
Gene Tree for MIR548G (if available)

Paralogs for MIR548G Gene

No data available for Paralogs for MIR548G Gene

Variants for MIR548G Gene

Sequence variations from dbSNP and Humsavar for MIR548G Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs1005771 -- 147,346,421(-) ATTAG(A/T)GGTTA upstream-variant-2KB
rs1560227 -- 147,346,245(+) cgtgg(A/G)ctgtg upstream-variant-2KB
rs1975060 -- 147,345,978(+) ctata(C/T)aaatt upstream-variant-2KB
rs3063775 -- 147,344,525(+) TTTAT(-/TTAT)GCACA downstream-variant-500B
rs56723111 -- 147,345,469(+) TTTTT(-/T)ACAAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR548G Gene

Variant ID Type Subtype PubMed ID
nsv822192 CNV Loss 20364138
nsv520742 CNV Loss 19592680
esv2658441 CNV Deletion 23128226
esv2660038 CNV Deletion 23128226
nsv877217 CNV Loss 21882294
nsv508231 CNV Loss 20534489
esv2666929 CNV Deletion 23128226
nsv822193 CNV Loss 20364138
nsv3918 CNV Insertion 18451855
nsv822194 CNV Loss 20364138
esv2663491 CNV Deletion 23128226
esv2725686 CNV Deletion 23290073
esv2332259 CNV Deletion 18987734
esv2725687 CNV Deletion 23290073
esv988265 CNV Deletion 20482838
esv2945 CNV Deletion 18987735
esv2725688 CNV Deletion 23290073
esv987776 CNV Deletion 20482838
esv2668597 CNV Deletion 23128226
esv26006 CNV Loss 19812545
esv998785 CNV Loss 20482838
dgv818n67 CNV Loss 20364138
esv2507771 CNV Insertion 19546169
esv1177720 CNV Insertion 17803354
esv1440096 CNV Insertion 17803354
nsv822197 CNV Loss 20364138
esv2670786 CNV Deletion 23128226
esv2725689 CNV Deletion 23290073

Relevant External Links for MIR548G Gene

HapMap Linkage Disequilibrium report
MIR548G

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MIR548G Gene

Disorders for MIR548G Gene

No disorders were found for MIR548G Gene.

No data available for UniProtKB/Swiss-Prot for MIR548G Gene

Publications for MIR548G Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin R.D. … Marra M.A. (Genome Res. 2008) 3

Products for MIR548G Gene

Sources for MIR548G Gene

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