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Aliases for MIR548F5 Gene

Subcategory (RNA class) for MIR548F5 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR548F5 Gene

  • MicroRNA 548f-5 2 3
  • Hsa-Mir-548f-5 3
  • MIR548F-5 3
  • MIRN548F5 3

External Ids for MIR548F5 Gene

Previous HGNC Symbols for MIR548F5 Gene

  • MIRN548F5

Previous GeneCards Identifiers for MIR548F5 Gene

  • GC00U923172
  • GC0XM032570

Summaries for MIR548F5 Gene

Entrez Gene Summary for MIR548F5 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548F5 Gene

MIR548F5 (MicroRNA 548f-5) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548F5 Gene

Genomics for MIR548F5 Gene

Genomic Location for MIR548F5 Gene

Start:
32,641,474 bp from pter
End:
32,641,559 bp from pter
Size:
86 bases
Orientation:
Minus strand

Genomic View for MIR548F5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR548F5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548F5 Gene

No data available for Regulatory Elements for MIR548F5 Gene

Proteins for MIR548F5 Gene

Post-translational modifications for MIR548F5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548F5 Gene

Domains for MIR548F5 Gene

Gene Families for MIR548F5 Gene

HGNC:
  • MIR :ncRNAs / Micro RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548F5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548F5 Gene

Function for MIR548F5 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR548F5 Gene

Localization for MIR548F5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR548F5 Gene

Pathways for MIR548F5 Gene

SuperPathways for MIR548F5 Gene

No Data Available

Interacting Proteins for MIR548F5 Gene

Gene Ontology (GO) - Biological Process for MIR548F5 Gene

None

No data available for Pathways by source for MIR548F5 Gene

Transcripts for MIR548F5 Gene

mRNA/cDNA for MIR548F5 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548F5 Gene

No ASD Table

Relevant External Links for MIR548F5 Gene

GeneLoc Exon Structure for
MIR548F5
ECgene alternative splicing isoforms for
MIR548F5

Expression for MIR548F5 Gene

mRNA expression in normal human tissues for MIR548F5 Gene

genes like me logo Genes that share expressions with MIR548F5: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for MIR548F5 Gene

Orthologs for MIR548F5 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548F5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 95 (a)
OneToOne
Species with no ortholog for MIR548F5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548F5 Gene

ENSEMBL:
Gene Tree for MIR548F5 (if available)
TreeFam:
Gene Tree for MIR548F5 (if available)

Paralogs for MIR548F5 Gene

No data available for Paralogs for MIR548F5 Gene

Variants for MIR548F5 Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR548F5 Gene

Variant ID Type Subtype PubMed ID
nsv899990 CNV Gain 21882294
nsv832579 CNV Loss 17160897
nsv510329 CNV Loss 20534489
nsv899991 CNV Loss 21882294
nsv832580 CNV Loss 17160897
esv2747259 CNV Deletion 23290073
esv2668176 CNV Deletion 23128226
esv2747260 CNV Deletion 23290073
esv259745 OTHER Complex 20981092
esv24137 CNV Gain 19812545
nsv507690 CNV Insertion 20534489
esv993454 CNV Insertion 20482838
esv268414 CNV Insertion 20981092
esv274407 CNV Insertion 20981092
esv2650041 CNV Deletion 19546169
esv2021136 CNV Deletion 18987734
dgv347e199 CNV Deletion 23128226
esv2747261 CNV Deletion 23290073
esv2659000 CNV Deletion 23128226
esv4657 CNV Deletion 18987735
esv2747262 CNV Deletion 23290073
esv2670454 CNV Deletion 23128226
nsv64246 CNV Loss 16902084
nsv524786 CNV Loss 19592680
nsv510948 CNV Complex 20534489

Relevant External Links for MIR548F5 Gene

HapMap Linkage Disequilibrium report
MIR548F5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for MIR548F5 Gene

Disorders for MIR548F5 Gene

No disorders were found for MIR548F5 Gene.

No data available for UniProtKB/Swiss-Prot for MIR548F5 Gene

Publications for MIR548F5 Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin R.D. … Marra M.A. (Genome Res. 2008) 3

Products for MIR548F5 Gene

Sources for MIR548F5 Gene

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