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Aliases for MIR548F3 Gene

Subcategory (RNA class) for MIR548F3 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR548F3 Gene

  • MicroRNA 548f-3 2 3 5
  • Hsa-Mir-548f-3 3
  • MIR548F-3 3
  • MIRN548F3 3

External Ids for MIR548F3 Gene

Previous HGNC Symbols for MIR548F3 Gene

  • MIRN548F3

Previous GeneCards Identifiers for MIR548F3 Gene

  • GC00U923119
  • GC05M109878
  • GC05M109849

Summaries for MIR548F3 Gene

Entrez Gene Summary for MIR548F3 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548F3 Gene

MIR548F3 (MicroRNA 548f-3) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548F3 Gene

Genomics for MIR548F3 Gene

Genomic Location for MIR548F3 Gene

Chromosome:
5
Start:
110,513,829 bp from pter
End:
110,513,915 bp from pter
Size:
87 bases
Orientation:
Minus strand

Genomic View for MIR548F3 Gene

Genes around MIR548F3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548F3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548F3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548F3 Gene

No data available for Regulatory Elements for MIR548F3 Gene

Proteins for MIR548F3 Gene

Post-translational modifications for MIR548F3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548F3 Gene

Domains & Families for MIR548F3 Gene

Gene Families for MIR548F3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548F3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548F3 Gene

Function for MIR548F3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548F3 Gene

Localization for MIR548F3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR548F3 Gene

Pathways & Interactions for MIR548F3 Gene

SuperPathways for MIR548F3 Gene

No Data Available

Interacting Proteins for MIR548F3 Gene

Gene Ontology (GO) - Biological Process for MIR548F3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR548F3 Gene

Drugs & Compounds for MIR548F3 Gene

No Compound Related Data Available

Transcripts for MIR548F3 Gene

mRNA/cDNA for MIR548F3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548F3 Gene

No ASD Table

Relevant External Links for MIR548F3 Gene

GeneLoc Exon Structure for
MIR548F3
ECgene alternative splicing isoforms for
MIR548F3

Expression for MIR548F3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR548F3 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR548F3 Gene:

MIR548F3
genes like me logo Genes that share expression patterns with MIR548F3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR548F3 Gene

Orthologs for MIR548F3 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548F3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-548f-2 35
  • 100 (a)
OneToOne
Species where no ortholog for MIR548F3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548F3 Gene

ENSEMBL:
Gene Tree for MIR548F3 (if available)
TreeFam:
Gene Tree for MIR548F3 (if available)

Paralogs for MIR548F3 Gene

No data available for Paralogs for MIR548F3 Gene

Variants for MIR548F3 Gene

Sequence variations from dbSNP and Humsavar for MIR548F3 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1001618148 -- 110,515,505(+) TCTTA(A/T)AAGAA intron-variant, upstream-variant-2KB
rs1001791233 -- 110,515,745(+) TTAGC(C/T)ACTCC intron-variant, upstream-variant-2KB
rs1005119744 -- 110,515,468(+) AGCCA(A/G)AAACA intron-variant, upstream-variant-2KB
rs10051407 -- 110,514,940(+) TCATA(A/C/T)GGCAG intron-variant, upstream-variant-2KB
rs1006330718 -- 110,513,965(+) ATATC(G/T)GCACT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR548F3 Gene

Variant ID Type Subtype PubMed ID
dgv266n106 CNV deletion 24896259
esv1089132 CNV deletion 17803354
esv1220167 CNV insertion 17803354
esv24370 CNV loss 19812545
esv2605796 CNV deletion 19546169
esv2723051 CNV deletion 23290073
esv2759369 CNV loss 17122850
esv2762220 CNV loss 21179565
esv3308605 CNV mobile element insertion 20981092
esv3361007 CNV insertion 20981092
esv3363087 CNV insertion 20981092
esv3367405 CNV duplication 20981092
esv3385952 CNV insertion 20981092
esv3449706 CNV insertion 20981092
esv3450121 CNV insertion 20981092
esv34732 CNV loss 17911159
esv3546855 CNV deletion 23714750
esv3575683 CNV gain 25503493
esv3578441 CNV loss 25503493
esv3578442 CNV loss 25503493
esv3588870 CNV loss 21293372
esv3588871 CNV loss 21293372
esv3588872 CNV loss 21293372
esv3588873 CNV loss 21293372
esv3588876 CNV loss 21293372
esv4179 CNV loss 18987735
esv8114 CNV gain 19470904
esv8778 CNV loss 19470904
nsv1000897 CNV loss 25217958
nsv1002772 CNV loss 25217958
nsv1010342 CNV gain 25217958
nsv1010912 CNV loss 25217958
nsv1014510 CNV loss 25217958
nsv1016954 CNV loss 25217958
nsv1027985 CNV loss 25217958
nsv1034262 CNV loss 25217958
nsv1068868 CNV deletion 25765185
nsv1111014 CNV tandem duplication 24896259
nsv1113216 CNV deletion 24896259
nsv1122448 CNV deletion 24896259
nsv1151394 CNV deletion 26484159
nsv1160081 CNV deletion 26073780
nsv4609 CNV insertion 18451855
nsv477257 CNV novel sequence insertion 20440878
nsv512758 CNV insertion 21212237
nsv525059 CNV loss 19592680
nsv528696 CNV loss 19592680
nsv549219 CNV loss 21841781
nsv549220 CNV loss 21841781
nsv549221 CNV loss 21841781
nsv599355 CNV loss 21841781
nsv818375 CNV loss 17921354
nsv826642 CNV gain 20364138
nsv826653 CNV loss 20364138
nsv830445 CNV gain 17160897
nsv832603 CNV gain 17160897
nsv832614 CNV gain 17160897
nsv954076 CNV deletion 24416366

Relevant External Links for MIR548F3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR548F3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR548F3 Gene

Disorders for MIR548F3 Gene

Relevant External Links for MIR548F3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR548F3

No disorders were found for MIR548F3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548F3 Gene

Publications for MIR548F3 Gene

  1. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. (PMID: 18285502) Morin R.D. … Marra M.A. (Genome Res. 2008) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR548F3 Gene

Sources for MIR548F3 Gene

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