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Aliases for MIR548C Gene

Subcategory (RNA class) for MIR548C Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR548C Gene

  • MicroRNA 548c 2 3
  • Hsa-Mir-548c 3
  • MIRN548C 3

External Ids for MIR548C Gene

ORGUL Members for MIR548C Gene

Previous Symbols for MIR548C Gene

  • MIRN548C

Summaries for MIR548C Gene

Entrez Gene Summary for MIR548C Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548C Gene

MIR548C (MicroRNA 548c) is a RNA Gene, and belongs to miRNA RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548C Gene

Genomics for MIR548C Gene

Genomic Location for MIR548C Gene

Start:
64,622,509 bp from pter
End:
64,622,605 bp from pter
Size:
97 bases
Orientation:
Plus strand

Genomic View for MIR548C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR548C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548C Gene

No data available for Regulatory Elements for MIR548C Gene

Proteins for MIR548C Gene

Post-translational modifications for MIR548C Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548C Gene

Domains for MIR548C Gene

Gene Families for MIR548C Gene

HGNC:
  • MIR :ncRNAs / Micro RNAs
genes like me logo Genes that share domains with MIR548C: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for MIR548C Gene

Function for MIR548C Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR548C Gene

Localization for MIR548C Gene

No data available for Gene Ontology (GO) - Cellular Components for MIR548C Gene

Pathways for MIR548C Gene

SuperPathways for MIR548C Gene

No Data Available

Interacting Proteins for MIR548C Gene

Gene Ontology (GO) - Biological Process for MIR548C Gene

None

No data available for Pathways by source for MIR548C Gene

Transcripts for MIR548C Gene

mRNA/cDNA for MIR548C Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548C Gene

No ASD Table

Relevant External Links for MIR548C Gene

GeneLoc Exon Structure for
MIR548C
ECgene alternative splicing isoforms for
MIR548C

Expression for MIR548C Gene

mRNA expression in normal human tissues for MIR548C Gene

genes like me logo Genes that share expressions with MIR548C: view

Orthologs for MIR548C Gene

Evolution for MIR548C Gene

ENSEMBL:
Gene Tree for MIR548C (if available)
TreeFam:
Gene Tree for MIR548C (if available)

No data available for Orthologs for MIR548C Gene

Paralogs for MIR548C Gene

No data available for Paralogs for MIR548C Gene

Variants for MIR548C Gene

Structural Variations from Database of Genomic Variants (DGV) for MIR548C Gene

Variant ID Type Subtype PubMed ID
nsv832443 CNV Loss 17160897
nsv832444 CNV Loss 17160897

Relevant External Links for MIR548C Gene

HapMap Linkage Disequilibrium report
MIR548C

No data available for Sequence variations from dbSNP and Humsavar for MIR548C Gene

Disorders for MIR548C Gene

No disorders were found for MIR548C Gene.

No data available for UniProtKB/Swiss-Prot for MIR548C Gene

Publications for MIR548C Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. The colorectal microRNAome. (PMID: 16505370) Cummins J.M. … Velculescu V.E. (Proc. Natl. Acad. Sci. U.S.A. 2006) 3
  3. A mammalian microRNA expression atlas based on small RNA library sequencing. (PMID: 17604727) Landgraf P. … Tuschl T. (Cell 2007) 3
  4. miRNA-548c: a specific signature in circulating PBMCs from dilated cardiomyopathy patients. (PMID: 23735785) Gupta M.K. … Naga Prasad S.V. (J. Mol. Cell. Cardiol. 2013) 3

Products for MIR548C Gene

Sources for MIR548C Gene

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