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Aliases for MIR548AS Gene

Subcategory (RNA class) for MIR548AS Gene


Quality Score for this RNA gene is


Aliases for MIR548AS Gene

  • MicroRNA 548as 2 3 5
  • Hsa-Mir-548as 3

External Ids for MIR548AS Gene

Previous GeneCards Identifiers for MIR548AS Gene

  • GC13U900877
  • GC13P093143

Summaries for MIR548AS Gene

Entrez Gene Summary for MIR548AS Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548AS Gene

MIR548AS (MicroRNA 548as) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548AS Gene

Genomics for MIR548AS Gene

Regulatory Elements for MIR548AS Gene

Enhancers for MIR548AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F092510 0.6 ENCODE 0.3 +20.4 20410 0.2 CEBPB MYC GC13M092516 MIR548AS
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR548AS on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR548AS Gene

92,490,163 bp from pter
92,490,220 bp from pter
58 bases
Plus strand

Genomic View for MIR548AS Gene

Genes around MIR548AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548AS Gene

Proteins for MIR548AS Gene

Post-translational modifications for MIR548AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548AS Gene

Domains & Families for MIR548AS Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548AS Gene

Function for MIR548AS Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548AS Gene

Localization for MIR548AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR548AS Gene

Pathways & Interactions for MIR548AS Gene

SuperPathways for MIR548AS Gene

No Data Available

Interacting Proteins for MIR548AS Gene

Gene Ontology (GO) - Biological Process for MIR548AS Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR548AS Gene

Transcripts for MIR548AS Gene

mRNA/cDNA for MIR548AS Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548AS Gene

No ASD Table

Relevant External Links for MIR548AS Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR548AS Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR548AS Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR548AS Gene

Orthologs for MIR548AS Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548AS Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia -- 35
  • 48 (a)
Species where no ortholog for MIR548AS was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548AS Gene

Gene Tree for MIR548AS (if available)
Gene Tree for MIR548AS (if available)

Paralogs for MIR548AS Gene

No data available for Paralogs for MIR548AS Gene

Variants for MIR548AS Gene

Sequence variations from dbSNP and Humsavar for MIR548AS Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs112386073 -- 92,490,097(+) TTCAG(C/T)GCATT intron-variant, upstream-variant-2KB
rs112416833 -- 92,490,174(+) AATTG(C/T)GGGTT intron-variant, nc-transcript-variant
rs114142951 -- 92,490,660(+) GTTTT(A/G)TAAAT intron-variant, downstream-variant-500B
rs114391036 -- 92,489,725(+) TCACC(A/G)CGTTC intron-variant, upstream-variant-2KB
rs114572186 -- 92,488,515(+) AGCTG(C/T)TTAAC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR548AS Gene

Variant ID Type Subtype PubMed ID
esv3582694 CNV gain 25503493
nsv471168 CNV loss 18288195
nsv832680 CNV gain 17160897

Relevant External Links for MIR548AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR548AS Gene

Disorders for MIR548AS Gene

Relevant External Links for MIR548AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR548AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548AS Gene

Publications for MIR548AS Gene

  1. miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. (PMID: 21911355) FriedlAonder M.R. … Rajewsky N. (Nucleic Acids Res. 2012) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR548AS Gene

Sources for MIR548AS Gene

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