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Aliases for MIR548AR Gene

Subcategory (RNA class) for MIR548AR Gene


Quality Score for this RNA gene is


Aliases for MIR548AR Gene

  • MicroRNA 548ar 2 3 5
  • Hsa-Mir-548ar 3

External Ids for MIR548AR Gene

Previous GeneCards Identifiers for MIR548AR Gene

  • GC13U900874
  • GC13P115011

Summaries for MIR548AR Gene

Entrez Gene Summary for MIR548AR Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548AR Gene

MIR548AR (MicroRNA 548ar) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548AR Gene

Genomics for MIR548AR Gene

Regulatory Elements for MIR548AR Gene

Enhancers for MIR548AR Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F114249 0.5 ENCODE 0.8 +4.7 4716 0.2 CTCF ZBTB33 MIR548AR MIR4502
GH13F114234 1 ENCODE 0.4 -9.1 -9068 1.9 PKNOX1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 CBX5 ZNF143 CDC16 CHAMP1 UPF3A MIR548AR
GH13F114262 1 Ensembl ENCODE 0.3 +19.9 19920 4.1 PAF1 IKZF1 CDC16 CHAMP1 MIR4502 MIR548AR
GH13F114259 0.5 ENCODE 0.3 +16.3 16309 2.4 CTCF ZNF341 ZIC2 CDC16 UPF3A CHAMP1 RASA3 MIR4502 MIR548AR
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR548AR on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR548AR Gene

114,244,505 bp from pter
114,244,561 bp from pter
57 bases
Plus strand

Genomic View for MIR548AR Gene

Genes around MIR548AR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548AR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548AR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548AR Gene

Proteins for MIR548AR Gene

Post-translational modifications for MIR548AR Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548AR Gene

Domains & Families for MIR548AR Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548AR Gene

Function for MIR548AR Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548AR Gene

Localization for MIR548AR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR548AR Gene

Pathways & Interactions for MIR548AR Gene

SuperPathways for MIR548AR Gene

No Data Available

Interacting Proteins for MIR548AR Gene

Gene Ontology (GO) - Biological Process for MIR548AR Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR548AR Gene

Transcripts for MIR548AR Gene

mRNA/cDNA for MIR548AR Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548AR Gene

No ASD Table

Relevant External Links for MIR548AR Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR548AR Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR548AR Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR548AR Gene:

genes like me logo Genes that share expression patterns with MIR548AR: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR548AR Gene

Orthologs for MIR548AR Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548AR Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia -- 35
  • 42 (a)
Species where no ortholog for MIR548AR was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548AR Gene

Gene Tree for MIR548AR (if available)
Gene Tree for MIR548AR (if available)

Paralogs for MIR548AR Gene

No data available for Paralogs for MIR548AR Gene

Variants for MIR548AR Gene

Sequence variations from dbSNP and Humsavar for MIR548AR Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs112683123 -- 114,243,908(+) GCAAG(A/G)GAATC nc-transcript-variant, upstream-variant-2KB, reference, missense
rs114476097 -- 114,244,435(+) GGTTC(A/G)GTTTA intron-variant, upstream-variant-2KB
rs11616300 -- 114,242,759(+) GGATT(A/C)TAACA intron-variant, upstream-variant-2KB
rs12585785 -- 114,244,566(+) CACCA(A/G)CCTAA intron-variant, downstream-variant-500B
rs138031861 -- 114,243,309(+) GAACA(G/T)GAATT nc-transcript-variant, upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for MIR548AR Gene

Variant ID Type Subtype PubMed ID
dgv1745n100 CNV gain 25217958
dgv1746n100 CNV gain 25217958
esv25715 CNV gain+loss 19812545
esv3633642 CNV gain 21293372
esv3633643 CNV gain 21293372
nsv1043111 CNV gain 25217958
nsv1050622 CNV gain 25217958
nsv456143 CNV gain 19166990
nsv563532 CNV gain 21841781
nsv832728 CNV gain 17160897

Relevant External Links for MIR548AR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR548AR Gene

Disorders for MIR548AR Gene

Relevant External Links for MIR548AR

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR548AR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548AR Gene

Publications for MIR548AR Gene

  1. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. (PMID: 24927181) Navarini A.A. … Barker J.N. (Nat Commun 2014) 3 64
  2. miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. (PMID: 21911355) FriedlAonder M.R. … Rajewsky N. (Nucleic Acids Res. 2012) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR548AR Gene

Sources for MIR548AR Gene

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