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Aliases for MIR548AQ Gene

Subcategory (RNA class) for MIR548AQ Gene


Quality Score for this RNA gene is


Aliases for MIR548AQ Gene

  • MicroRNA 548aq 2 3 5
  • Hsa-Mir-548aq 3

External Ids for MIR548AQ Gene

Previous GeneCards Identifiers for MIR548AQ Gene

  • GC03U901815
  • GC03M185486

Summaries for MIR548AQ Gene

Entrez Gene Summary for MIR548AQ Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548AQ Gene

MIR548AQ (MicroRNA 548aq) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548AQ Gene

Genomics for MIR548AQ Gene

Regulatory Elements for MIR548AQ Gene

Enhancers for MIR548AQ Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F185762 1.2 FANTOM5 Ensembl ENCODE 0.8 +3.6 3631 3.1 SCRT1 PKNOX1 SCRT2 EBF1 ZEB2 PRDM1 SP7 EGR2 IGF2BP2-AS1 MIR548AQ
GH03F185769 0.8 ENCODE 0.8 -0.8 -784 0.2 CTCF USF1 MAX RAD21 RFX5 CHAMP1 ZNF143 SMC3 ZNF652 ZNF654 IGF2BP2-AS1 IGF2BP2 MIR548AQ
GH03F185766 0.5 Ensembl 0.8 +0.9 904 0.8 ESRRA CEBPG ZBTB40 IGF2BP2 IGF2BP2-AS1 MIR548AQ
GH03F185773 1 Ensembl ENCODE 0.4 -6.1 -6129 0.7 LEF1 NFIA ZBTB8A FEZF1 REST ZIC2 GATA2 ZNF341 BCL6 ZNF600 IGF2BP2-AS1 IGF2BP2 MIR548AQ
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR548AQ on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR548AQ Gene

185,767,847 bp from pter
185,767,904 bp from pter
58 bases
Minus strand

Genomic View for MIR548AQ Gene

Genes around MIR548AQ on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548AQ Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548AQ Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548AQ Gene

ORGUL Member Location for MIR548AQ Gene

ORGUL Member Location for MIR548AQ gene

Proteins for MIR548AQ Gene

Post-translational modifications for MIR548AQ Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548AQ Gene

Domains & Families for MIR548AQ Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548AQ Gene

Function for MIR548AQ Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548AQ Gene

Localization for MIR548AQ Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR548AQ Gene

Pathways & Interactions for MIR548AQ Gene

SuperPathways for MIR548AQ Gene

No Data Available

Interacting Proteins for MIR548AQ Gene

Gene Ontology (GO) - Biological Process for MIR548AQ Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR548AQ Gene

Transcripts for MIR548AQ Gene

mRNA/cDNA for MIR548AQ Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548AQ Gene

No ASD Table

Relevant External Links for MIR548AQ Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR548AQ Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR548AQ Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR548AQ Gene

Orthologs for MIR548AQ Gene

Evolution for MIR548AQ Gene

Gene Tree for MIR548AQ (if available)
Gene Tree for MIR548AQ (if available)

No data available for Orthologs for MIR548AQ Gene

Paralogs for MIR548AQ Gene

No data available for Paralogs for MIR548AQ Gene

Variants for MIR548AQ Gene

Sequence variations from dbSNP and Humsavar for MIR548AQ Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs113038229 -- 185,769,575(+) CTCAC(A/G)CTTGT intron-variant, upstream-variant-2KB
rs114482534 -- 185,769,639(+) TCAAG(A/G)CCATC intron-variant, upstream-variant-2KB
rs116717156 -- 185,767,780(+) ATGTA(C/G)TGTTC intron-variant, downstream-variant-500B
rs139767244 -- 185,768,407(+) CAGGA(C/T)AGATT intron-variant, upstream-variant-2KB
rs139844605 -- 185,767,573(+) AAAAT(C/G)TATTT intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for MIR548AQ Gene

Variant ID Type Subtype PubMed ID
nsv1053272 CNV gain 25217958

Relevant External Links for MIR548AQ Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR548AQ Gene

Disorders for MIR548AQ Gene

Relevant External Links for MIR548AQ

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR548AQ Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548AQ Gene

Publications for MIR548AQ Gene

  1. miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. (PMID: 21911355) FriedlAonder M.R. … Rajewsky N. (Nucleic Acids Res. 2012) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR548AQ Gene

Sources for MIR548AQ Gene

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