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Aliases for MIR548AQ Gene

Subcategory (RNA class) for MIR548AQ Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR548AQ Gene

  • MicroRNA 548aq 2 3 5
  • Hsa-Mir-548aq 3

External Ids for MIR548AQ Gene

Previous GeneCards Identifiers for MIR548AQ Gene

  • GC03U901815
  • GC03M185486

Summaries for MIR548AQ Gene

Entrez Gene Summary for MIR548AQ Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548AQ Gene

MIR548AQ (MicroRNA 548aq) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR548AQ Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548AQ Gene

Genomics for MIR548AQ Gene

Regulatory Elements for MIR548AQ Gene

Enhancers for MIR548AQ Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H185762 1.2 FANTOM5 Ensembl ENCODE 0.7 +3.7 3684 2 SCRT1 PKNOX1 SOX6 ZNF10 ZEB2 EBF1 ZNF629 SCRT2 PRDM1 SP7 IGF2BP2-AS1 MIR548AQ
GH03H185768 1 ENCODE dbSUPER 0.7 -0.8 -784 0 CTCF MAX RAD21 CHAMP1 RFX5 CC2D1A SMC3 ZNF143 TFE3 ZNF654 TRA2B TBCCD1 IGF2BP2-AS1 IGF2BP2 MIR548AQ
GH03H185723 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +36.6 36638 15 ARID4B FEZF1 TCF12 ZNF766 GATA2 ZNF143 FOS RUNX3 DEK JUNB TRA2B VPS8 IGF2BP2-AS1 MIR548AQ
GH03H185795 1.5 Ensembl ENCODE dbSUPER 0.3 -29.1 -29077 3 PKNOX1 FOXA2 ARNT ARID4B FOS NFIL3 MAFF SMARCA4 GLIS1 RCOR2 IGF2BP2 IGF2BP2-AS1 MIR548AQ
GH03H185807 1.5 Ensembl ENCODE dbSUPER 0.3 -39.9 -39919 1 PKNOX1 FEZF1 GLIS2 CBX5 FOS ATF7 SP3 TSHZ1 ZNF518A MAFF TRA2B SNORA4 TBCCD1 RFC4 SNORA81 ENSG00000200418 SNORA63 IGF2BP2 MIR548AQ
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR548AQ on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR548AQ Gene

Chromosome:
3
Start:
185,767,847 bp from pter
End:
185,767,904 bp from pter
Size:
58 bases
Orientation:
Minus strand

Genomic View for MIR548AQ Gene

Genes around MIR548AQ on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548AQ Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548AQ Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548AQ Gene

ORGUL Member Location for MIR548AQ Gene

ORGUL Member Location for MIR548AQ gene

Proteins for MIR548AQ Gene

Post-translational modifications for MIR548AQ Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548AQ Gene

Domains & Families for MIR548AQ Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548AQ Gene

Function for MIR548AQ Gene

Phenotypes From GWAS Catalog for MIR548AQ Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for MIR548AQ
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548AQ Gene

Localization for MIR548AQ Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR548AQ Gene

Pathways & Interactions for MIR548AQ Gene

SuperPathways for MIR548AQ Gene

No Data Available

Interacting Proteins for MIR548AQ Gene

Gene Ontology (GO) - Biological Process for MIR548AQ Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR548AQ Gene

Drugs & Compounds for MIR548AQ Gene

No Compound Related Data Available

Transcripts for MIR548AQ Gene

mRNA/cDNA for MIR548AQ Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for MIR548AQ
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548AQ Gene

No ASD Table

Relevant External Links for MIR548AQ Gene

GeneLoc Exon Structure for
MIR548AQ
ECgene alternative splicing isoforms for
MIR548AQ

Expression for MIR548AQ Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR548AQ Gene:

MIR548AQ
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR548AQ Gene

Orthologs for MIR548AQ Gene

Evolution for MIR548AQ Gene

ENSEMBL:
Gene Tree for MIR548AQ (if available)
TreeFam:
Gene Tree for MIR548AQ (if available)

No data available for Orthologs for MIR548AQ Gene

Paralogs for MIR548AQ Gene

No data available for Paralogs for MIR548AQ Gene

Variants for MIR548AQ Gene

Sequence variations from dbSNP and Humsavar for MIR548AQ Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1001155488 -- 185,768,876(+) ACAGA(A/G)ATTAG intron-variant, upstream-variant-2KB
rs1001374456 -- 185,769,080(+) GTCCA(C/T)GCCTG intron-variant, upstream-variant-2KB
rs1003178351 -- 185,769,186(+) AAAAA(C/T)TTTTA intron-variant, upstream-variant-2KB
rs1004474948 -- 185,769,242(+) TTAGG(A/C)CAAGG intron-variant, upstream-variant-2KB
rs1006126762 -- 185,767,542(+) TCCAA(G/T)AAAGG intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for MIR548AQ Gene

Variant ID Type Subtype PubMed ID
nsv1053272 CNV gain 25217958

Relevant External Links for MIR548AQ Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR548AQ

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR548AQ Gene

Disorders for MIR548AQ Gene

Relevant External Links for MIR548AQ

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR548AQ

No disorders were found for MIR548AQ Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548AQ Gene

Publications for MIR548AQ Gene

  1. miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. (PMID: 21911355) Friedländer MR … Rajewsky N (Nucleic acids research 2012) 3 60
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR548AQ Gene

Sources for MIR548AQ Gene

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