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Aliases for MIR548AP Gene

Subcategory (RNA class) for MIR548AP Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR548AP Gene

  • MicroRNA 548ap 2 3
  • Hsa-Mir-548ap 3

External Ids for MIR548AP Gene

Summaries for MIR548AP Gene

Entrez Gene Summary for MIR548AP Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548AP Gene

MIR548AP (MicroRNA 548ap) is a RNA Gene, and belongs to miRNA RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548AP Gene

Genomics for MIR548AP Gene

Genomic Location for MIR548AP Gene

Start:
85,825,635 bp from pter
End:
85,825,730 bp from pter
Size:
96 bases
Orientation:
Plus strand

Genomic View for MIR548AP Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR548AP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548AP Gene

No data available for Regulatory Elements for MIR548AP Gene

Proteins for MIR548AP Gene

Post-translational modifications for MIR548AP Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548AP Gene

Domains for MIR548AP Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for MIR548AP Gene

Function for MIR548AP Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR548AP Gene

Localization for MIR548AP Gene

No data available for Gene Ontology (GO) - Cellular Components for MIR548AP Gene

Pathways for MIR548AP Gene

SuperPathways for MIR548AP Gene

No Data Available

Interacting Proteins for MIR548AP Gene

Gene Ontology (GO) - Biological Process for MIR548AP Gene

None

No data available for Pathways by source for MIR548AP Gene

Transcripts for MIR548AP Gene

mRNA/cDNA for MIR548AP Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548AP Gene

No ASD Table

Relevant External Links for MIR548AP Gene

GeneLoc Exon Structure for
MIR548AP
ECgene alternative splicing isoforms for
MIR548AP

Expression for MIR548AP Gene

No Expression Related Data Available

Orthologs for MIR548AP Gene

Evolution for MIR548AP Gene

ENSEMBL:
Gene Tree for MIR548AP (if available)
TreeFam:
Gene Tree for MIR548AP (if available)

No data available for Orthologs for MIR548AP Gene

Paralogs for MIR548AP Gene

No data available for Paralogs for MIR548AP Gene

Variants for MIR548AP Gene

Sequence variations from dbSNP and Humsavar for MIR548AP Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs16815 -- 85,826,114(+) CAAGA(C/G)TAGCT downstream-variant-500B
rs17155 -- 85,826,221(+) CTTTC(C/T)AGGGA downstream-variant-500B
rs2880967 -- 85,826,095(-) AGTGG(C/T)GGTAG downstream-variant-500B
rs2880968 -- 85,825,972(-) TGGCA(C/T)TCTGT downstream-variant-500B
rs2927040 -- 85,824,220(+) CTAGT(A/G)AGCAC upstream-variant-2KB

Relevant External Links for MIR548AP Gene

HapMap Linkage Disequilibrium report
MIR548AP

No data available for Structural Variations from Database of Genomic Variants (DGV) for MIR548AP Gene

Disorders for MIR548AP Gene

No disorders were found for MIR548AP Gene.

No data available for UniProtKB/Swiss-Prot for MIR548AP Gene

Publications for MIR548AP Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. Genetic correlates of longevity and selected age-related phenotypes: a genome-wide association study in the Framingham Study. (PMID: 17903295) Lunetta K.L. … Murabito J.M. (BMC Med. Genet. 2007) 3
  3. Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis. (PMID: 21558790) Hansen T.B. … Bramsen J.B. (RNA Biol 2011) 3

Products for MIR548AP Gene

Sources for MIR548AP Gene

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