Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR548AN Gene

Subcategory (RNA class) for MIR548AN Gene


Quality Score for this RNA gene is


Aliases for MIR548AN Gene

  • MicroRNA 548an 2 3 5
  • Hsa-Mir-548an 3

External Ids for MIR548AN Gene

Previous GeneCards Identifiers for MIR548AN Gene

  • GC0XU901750
  • GC0XP105884

Summaries for MIR548AN Gene

Entrez Gene Summary for MIR548AN Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548AN Gene

MIR548AN (MicroRNA 548an) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR548AN Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548AN Gene

Genomics for MIR548AN Gene

GeneHancer (GH) Regulatory Elements for MIR548AN Gene

Promoters and enhancers for MIR548AN Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI106611 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 0.3 -27.5 -27451 2.2 PKNOX1 RB1 ARID4B RFX5 ZNF335 ZNF121 ZNF366 ZSCAN5C SCRT2 SP3 CXorf57 MIR548AN
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR548AN on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR548AN Gene

Genomic Locations for MIR548AN Gene
83 bases
Plus strand

Genomic View for MIR548AN Gene

Genes around MIR548AN on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548AN Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548AN Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548AN Gene

Proteins for MIR548AN Gene

Post-translational modifications for MIR548AN Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548AN Gene

Domains & Families for MIR548AN Gene

Gene Families for MIR548AN Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548AN: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548AN Gene

Function for MIR548AN Gene

Phenotypes From GWAS Catalog for MIR548AN Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548AN Gene

Localization for MIR548AN Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR548AN Gene

Pathways & Interactions for MIR548AN Gene

SuperPathways for MIR548AN Gene

No Data Available

Interacting Proteins for MIR548AN Gene

Gene Ontology (GO) - Biological Process for MIR548AN Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR548AN Gene

Drugs & Compounds for MIR548AN Gene

No Compound Related Data Available

Transcripts for MIR548AN Gene

mRNA/cDNA for MIR548AN Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548AN Gene

No ASD Table

Relevant External Links for MIR548AN Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR548AN Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR548AN Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR548AN Gene:

genes like me logo Genes that share expression patterns with MIR548AN: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR548AN Gene

Orthologs for MIR548AN Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548AN Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia -- 34
  • 99 (a)
Species where no ortholog for MIR548AN was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548AN Gene

Gene Tree for MIR548AN (if available)
Gene Tree for MIR548AN (if available)

Paralogs for MIR548AN Gene

No data available for Paralogs for MIR548AN Gene

Variants for MIR548AN Gene

Sequence variations from dbSNP and Humsavar for MIR548AN Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000811157 -- 106,638,315(+) T/G upstream_transcript_variant
rs1003572863 -- 106,639,353(+) G/A upstream_transcript_variant
rs1003721045 -- 106,638,890(+) C/T upstream_transcript_variant
rs1004381759 -- 106,638,996(+) T/C upstream_transcript_variant
rs1004900695 -- 106,639,993(+) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR548AN Gene

Variant ID Type Subtype PubMed ID
esv2752312 CNV gain 17911159

Additional Variant Information for MIR548AN Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR548AN Gene

Disorders for MIR548AN Gene

Additional Disease Information for MIR548AN

No disorders were found for MIR548AN Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548AN Gene

Publications for MIR548AN Gene

  1. Sex-stratified genome-wide association studies including 270,000 individuals show sexual dimorphism in genetic loci for anthropometric traits. (PMID: 23754948) Randall JC … Heid IM (PLoS genetics 2013) 3 58
  2. Expression of non-structural-1A binding protein in lung epithelial cells is modulated by miRNA-548an on exposure to influenza A virus. (PMID: 24210102) Othumpangat S … Beezhold DH (Virology 2013) 3 58
  3. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. (PMID: 20733160) Jima DD … Hematologic Malignancies Research Consortium (Blood 2010) 3 58
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR548AN Gene

Sources for MIR548AN Gene

Loading form....