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Aliases for MIR548AL Gene

Subcategory (RNA class) for MIR548AL Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR548AL Gene

  • MicroRNA 548al 2 3 5
  • Hsa-Mir-548al 3

External Ids for MIR548AL Gene

Previous GeneCards Identifiers for MIR548AL Gene

  • GC11U901881
  • GC11P074112

Summaries for MIR548AL Gene

Entrez Gene Summary for MIR548AL Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548AL Gene

MIR548AL (MicroRNA 548al) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR548AL Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548AL Gene

Genomics for MIR548AL Gene

Regulatory Elements for MIR548AL Gene

Enhancers for MIR548AL Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H074397 1.1 ENCODE 0.7 -0.7 -712 2 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF766 ZNF207 C2CD3 POLD3 ENSG00000255440 PPME1 PGM2L1 MIR548AL
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR548AL on UCSC Golden Path with GeneCards custom track

Promoters for MIR548AL Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000041989 -937 2201 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF766 ZNF207

Genomic Location for MIR548AL Gene

Chromosome:
11
Start:
74,399,237 bp from pter
End:
74,399,333 bp from pter
Size:
97 bases
Orientation:
Plus strand

Genomic View for MIR548AL Gene

Genes around MIR548AL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548AL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548AL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548AL Gene

Proteins for MIR548AL Gene

Post-translational modifications for MIR548AL Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548AL Gene

Domains & Families for MIR548AL Gene

Gene Families for MIR548AL Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548AL: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548AL Gene

Function for MIR548AL Gene

Phenotypes From GWAS Catalog for MIR548AL Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for MIR548AL
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548AL Gene

Localization for MIR548AL Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR548AL Gene

Pathways & Interactions for MIR548AL Gene

SuperPathways for MIR548AL Gene

No Data Available

Interacting Proteins for MIR548AL Gene

Gene Ontology (GO) - Biological Process for MIR548AL Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR548AL Gene

Drugs & Compounds for MIR548AL Gene

No Compound Related Data Available

Transcripts for MIR548AL Gene

mRNA/cDNA for MIR548AL Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for MIR548AL
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548AL Gene

No ASD Table

Relevant External Links for MIR548AL Gene

GeneLoc Exon Structure for
MIR548AL
ECgene alternative splicing isoforms for
MIR548AL

Expression for MIR548AL Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR548AL Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR548AL Gene:

MIR548AL
genes like me logo Genes that share expression patterns with MIR548AL: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR548AL Gene

Orthologs for MIR548AL Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548AL Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 99 (a)
OneToOne
Species where no ortholog for MIR548AL was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548AL Gene

ENSEMBL:
Gene Tree for MIR548AL (if available)
TreeFam:
Gene Tree for MIR548AL (if available)

Paralogs for MIR548AL Gene

No data available for Paralogs for MIR548AL Gene

Variants for MIR548AL Gene

Sequence variations from dbSNP and Humsavar for MIR548AL Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000642438 -- 74,398,901(+) CCCCT(G/T)TCCTC upstream-variant-2KB
rs1002286398 -- 74,398,856(+) GCGGA(A/G)ACCGC upstream-variant-2KB
rs1002317659 -- 74,398,690(+) GGCTA(C/T)CACTA upstream-variant-2KB
rs1002654708 -- 74,397,368(+) GGTGG(A/G)TGGGG intron-variant, upstream-variant-2KB
rs1006582839 -- 74,399,555(+) GGAAA(G/T)CTCAC downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR548AL Gene

Variant ID Type Subtype PubMed ID
dgv209e214 CNV gain 21293372
esv2759837 CNV gain 17122850
esv34979 CNV gain 17911159
esv3626840 CNV gain 21293372
nsv1049915 CNV gain 25217958
nsv555443 CNV loss 21841781
nsv825994 CNV gain 20364138

Relevant External Links for MIR548AL Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR548AL

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR548AL Gene

Disorders for MIR548AL Gene

Relevant External Links for MIR548AL

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR548AL

No disorders were found for MIR548AL Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548AL Gene

Publications for MIR548AL Gene

  1. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. (PMID: 20733160) Jima DD … Hematologic Malignancies Research Consortium (Blood 2010) 3 60
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR548AL Gene

Sources for MIR548AL Gene

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