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Aliases for MIR548AK Gene

Subcategory (RNA class) for MIR548AK Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR548AK Gene

  • MicroRNA 548ak 2 3 5
  • Hsa-Mir-548ak 3

External Ids for MIR548AK Gene

Previous GeneCards Identifiers for MIR548AK Gene

  • GC10U901557
  • GC10P080511

Summaries for MIR548AK Gene

Entrez Gene Summary for MIR548AK Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548AK Gene

MIR548AK (MicroRNA 548ak) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548AK Gene

Genomics for MIR548AK Gene

Regulatory Elements for MIR548AK Gene

Enhancers for MIR548AK Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G012135 0.4 ENCODE 0.7 -5.0 -4981 0.2 BHLHE40 MIR548AK PIR56929
GH10G012153 0.8 FANTOM5 0.3 -22.4 -22377 0.1 RB1 CEBPG KMT2B E2F1 ZSCAN29 RNF2 NRF1 CHD1 CEBPB ZNF394 SEC61A2 DHTKD1 MIR548Q CAMK1D MIR548AK PIR56929
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR548AK on UCSC Golden Path with GeneCards custom track

Promoters for MIR548AK Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000024514 1116 1801 MLX AGO1 ZFP64 ARID4B SIN3A DMAP1 ZNF143 ZNF207 SP3 SP5

Genomic Location for MIR548AK Gene

Chromosome:
10
Start:
12,130,760 bp from pter
End:
12,130,816 bp from pter
Size:
57 bases
Orientation:
Minus strand

Genomic View for MIR548AK Gene

Genes around MIR548AK on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548AK Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548AK Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548AK Gene

ORGUL Member Location for MIR548AK Gene

ORGUL Member Location for MIR548AK gene

Proteins for MIR548AK Gene

Post-translational modifications for MIR548AK Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548AK Gene

Domains & Families for MIR548AK Gene

Gene Families for MIR548AK Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548AK: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548AK Gene

Function for MIR548AK Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548AK Gene

Localization for MIR548AK Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR548AK Gene

Pathways & Interactions for MIR548AK Gene

SuperPathways for MIR548AK Gene

No Data Available

Interacting Proteins for MIR548AK Gene

Gene Ontology (GO) - Biological Process for MIR548AK Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR548AK Gene

Drugs & Compounds for MIR548AK Gene

No Compound Related Data Available

Transcripts for MIR548AK Gene

mRNA/cDNA for MIR548AK Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548AK Gene

No ASD Table

Relevant External Links for MIR548AK Gene

GeneLoc Exon Structure for
MIR548AK
ECgene alternative splicing isoforms for
MIR548AK

Expression for MIR548AK Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR548AK Gene:

MIR548AK
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR548AK Gene

Orthologs for MIR548AK Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548AK Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 96 (a)
OneToOne
Species where no ortholog for MIR548AK was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548AK Gene

ENSEMBL:
Gene Tree for MIR548AK (if available)
TreeFam:
Gene Tree for MIR548AK (if available)

Paralogs for MIR548AK Gene

No data available for Paralogs for MIR548AK Gene

Variants for MIR548AK Gene

Sequence variations from dbSNP and Humsavar for MIR548AK Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000525151 -- 12,132,336(+) GGGCC(A/T)GGTGC intron-variant, upstream-variant-2KB
rs1000719988 -- 12,132,364(+) ATCCC(A/G)GCACT intron-variant, upstream-variant-2KB
rs1002140052 -- 12,130,793(+) CTTCT(C/T)AAAAA intron-variant, nc-transcript-variant
rs1004778863 -- 12,131,313(+) ATATA(A/C/G)AATCC intron-variant, upstream-variant-2KB
rs1005435972 -- 12,130,384(+) CCCAC(A/G)TATGT intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for MIR548AK Gene

Variant ID Type Subtype PubMed ID
dgv673n100 CNV gain 25217958
dgv674n100 CNV gain 25217958
nsv1035709 CNV gain 25217958

Relevant External Links for MIR548AK Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR548AK

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR548AK Gene

Disorders for MIR548AK Gene

Relevant External Links for MIR548AK

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR548AK

No disorders were found for MIR548AK Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548AK Gene

Publications for MIR548AK Gene

  1. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. (PMID: 20733160) Jima D.D. … Dave S.S. (Blood 2010) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR548AK Gene

Sources for MIR548AK Gene

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