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Aliases for MIR548AG2 Gene

Subcategory (RNA class) for MIR548AG2 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR548AG2 Gene

  • MicroRNA 548ag-2 2 3
  • Hsa-Mir-548ag-2 3

External Ids for MIR548AG2 Gene

Summaries for MIR548AG2 Gene

Entrez Gene Summary for MIR548AG2 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548AG2 Gene

MIR548AG2 (MicroRNA 548ag-2) is a RNA Gene, and belongs to miRNA RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548AG2 Gene

Genomics for MIR548AG2 Gene

Genomic Location for MIR548AG2 Gene

Start:
60,564,562 bp from pter
End:
60,564,625 bp from pter
Size:
64 bases
Orientation:
Plus strand

Genomic View for MIR548AG2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR548AG2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548AG2 Gene

No data available for Regulatory Elements for MIR548AG2 Gene

Proteins for MIR548AG2 Gene

Post-translational modifications for MIR548AG2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548AG2 Gene

Domains for MIR548AG2 Gene

Gene Families for MIR548AG2 Gene

HGNC:
  • MIR :ncRNAs / Micro RNAs
genes like me logo Genes that share domains with MIR548AG2: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for MIR548AG2 Gene

Function for MIR548AG2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR548AG2 Gene

Localization for MIR548AG2 Gene

No data available for Gene Ontology (GO) - Cellular Components for MIR548AG2 Gene

Pathways for MIR548AG2 Gene

SuperPathways for MIR548AG2 Gene

No Data Available

Interacting Proteins for MIR548AG2 Gene

Gene Ontology (GO) - Biological Process for MIR548AG2 Gene

None

No data available for Pathways by source for MIR548AG2 Gene

Transcripts for MIR548AG2 Gene

mRNA/cDNA for MIR548AG2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548AG2 Gene

No ASD Table

Relevant External Links for MIR548AG2 Gene

GeneLoc Exon Structure for
MIR548AG2
ECgene alternative splicing isoforms for
MIR548AG2

Expression for MIR548AG2 Gene

No Expression Related Data Available

Orthologs for MIR548AG2 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548AG2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 100 (a)
OneToOne
Species with no ortholog for MIR548AG2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548AG2 Gene

ENSEMBL:
Gene Tree for MIR548AG2 (if available)
TreeFam:
Gene Tree for MIR548AG2 (if available)

Paralogs for MIR548AG2 Gene

No data available for Paralogs for MIR548AG2 Gene

Variants for MIR548AG2 Gene

Sequence variations from dbSNP and Humsavar for MIR548AG2 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs817279 -- 60,564,328(+) TTATT(C/T)ATGCT upstream-variant-2KB
rs1561419 -- 60,562,920(-) TTTGG(C/G)GGTTT upstream-variant-2KB
rs1572781 -- 60,563,295(+) GAAAA(A/G)TTTTG upstream-variant-2KB
rs1572782 -- 60,564,317(+) ATAAT(A/G)AATTA upstream-variant-2KB
rs6071247 -- 60,562,727(+) cacac(C/T)acgtt upstream-variant-2KB

Relevant External Links for MIR548AG2 Gene

HapMap Linkage Disequilibrium report
MIR548AG2

No data available for Structural Variations from Database of Genomic Variants (DGV) for MIR548AG2 Gene

Disorders for MIR548AG2 Gene

No disorders were found for MIR548AG2 Gene.

No data available for UniProtKB/Swiss-Prot for MIR548AG2 Gene

Publications for MIR548AG2 Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. (PMID: 20733160) Jima D.D. … Dave S.S. (Blood 2010) 3

Products for MIR548AG2 Gene

Sources for MIR548AG2 Gene

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