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Aliases for MIR548AA1 Gene

Subcategory (RNA class) for MIR548AA1 Gene


Quality Score for this RNA gene is


Aliases for MIR548AA1 Gene

  • MicroRNA 548aa-1 2 3
  • Hsa-Mir-548aa-1 3
  • MicroRNA 548d-1 5
  • MIR548D1 5

External Ids for MIR548AA1 Gene

Previous GeneCards Identifiers for MIR548AA1 Gene

  • GC08U901479
  • GC08P124361

Summaries for MIR548AA1 Gene

Entrez Gene Summary for MIR548AA1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548AA1 Gene

MIR548AA1 (MicroRNA 548aa-1) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are miRNA targets in ECM and membrane receptors.

Additional gene information for MIR548AA1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548AA1 Gene

Genomics for MIR548AA1 Gene

GeneHancer (GH) Regulatory Elements for MIR548AA1 Gene

Promoters and enhancers for MIR548AA1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I123271 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.5 -74.2 -74161 4.3 HDGF PKNOX1 CLOCK FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B ZHX1 ZHX1-C8orf76 RNU6-875P MIR548AA1 DUTP2 FAM83A RNU6-628P
GH08I123688 Enhancer 1.2 Ensembl ENCODE dbSUPER 10.3 +343.9 343917 6 FOXA2 NFRKB RAD21 RARA RFX5 ZNF143 RUNX3 DEK SMARCA5 ZNF362 ANXA13 TATDN1 KLHL38 ATAD2 WDYHV1 LOC105375738 FBXO32 DUTP2 RNU6-875P MIR548AA1
GH08I123718 Enhancer 1.1 ENCODE dbSUPER 9.6 +371.9 371901 3.4 FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF48 YY1 RXRA SP5 ZHX2 LOC105375739 FAM91A1 FBXO32 ATAD2 WDYHV1 DUTP2 MIR548AA1 RNU6-875P ENSG00000253106 ANXA13
GH08I123374 Enhancer 0.8 ENCODE 12.4 +26.6 26569 1.1 SOX13 TFAP4 FOXA2 SAP130 CEBPG RARA TEAD3 CTBP1 GATA3 HNF4G DUTP2 MIR548AA1 RNU6-875P GC08M123342 IMPDH1P6 ATAD2
GH08I123462 Enhancer 1 Ensembl ENCODE dbSUPER 9.7 +115.0 114967 0.4 SMARCA5 ELF3 CTCF PKNOX1 ZNF654 CEBPB REST ELF1 RAD21 ARID2 ATAD2 WDYHV1 ANXA13 FBXO32 MIR548AA1 DUTP2 RNU6-875P ENSG00000278374 GC08M123499
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR548AA1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR548AA1 Gene

Genomic Locations for MIR548AA1 Gene
97 bases
Plus strand

Genomic View for MIR548AA1 Gene

Genes around MIR548AA1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548AA1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548AA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548AA1 Gene

Proteins for MIR548AA1 Gene

Post-translational modifications for MIR548AA1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548AA1 Gene

Domains & Families for MIR548AA1 Gene

Gene Families for MIR548AA1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548AA1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548AA1 Gene

Function for MIR548AA1 Gene

Phenotypes From GWAS Catalog for MIR548AA1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548AA1 Gene

Localization for MIR548AA1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR548AA1 Gene

Pathways & Interactions for MIR548AA1 Gene

genes like me logo Genes that share pathways with MIR548AA1: view

Pathways by source for MIR548AA1 Gene

1 BioSystems pathway for MIR548AA1 Gene

Interacting Proteins for MIR548AA1 Gene

Gene Ontology (GO) - Biological Process for MIR548AA1 Gene


No data available for SIGNOR curated interactions for MIR548AA1 Gene

Drugs & Compounds for MIR548AA1 Gene

No Compound Related Data Available

Transcripts for MIR548AA1 Gene

mRNA/cDNA for MIR548AA1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548AA1 Gene

No ASD Table

Relevant External Links for MIR548AA1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR548AA1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR548AA1 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR548AA1 Gene:

genes like me logo Genes that share expression patterns with MIR548AA1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR548AA1 Gene

Orthologs for MIR548AA1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548AA1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia -- 34
  • 85 (a)
Species where no ortholog for MIR548AA1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548AA1 Gene

Gene Tree for MIR548AA1 (if available)
Gene Tree for MIR548AA1 (if available)

Paralogs for MIR548AA1 Gene

No data available for Paralogs for MIR548AA1 Gene

Variants for MIR548AA1 Gene

Sequence variations from dbSNP and Humsavar for MIR548AA1 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000890730 -- 123,347,443(+) G/A upstream_transcript_variant
rs1001401286 -- 123,346,969(+) G/A upstream_transcript_variant
rs1001836744 -- 123,346,480(+) G/C upstream_transcript_variant
rs1001992081 -- 123,346,841(+) A/C upstream_transcript_variant
rs1005841542 -- 123,346,949(+) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR548AA1 Gene

Variant ID Type Subtype PubMed ID
nsv831449 CNV loss 17160897

Additional Variant Information for MIR548AA1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR548AA1 Gene

Disorders for MIR548AA1 Gene

Additional Disease Information for MIR548AA1

No disorders were found for MIR548AA1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548AA1 Gene

Publications for MIR548AA1 Gene

  1. Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls. (PMID: 20459774) Witten D … Lui WO (BMC biology 2010) 3 58
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR548AA1 Gene

Sources for MIR548AA1 Gene

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