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Aliases for MIR548A1 Gene

Subcategory (RNA class) for MIR548A1 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR548A1 Gene

  • MicroRNA 548a-1 2 3 5
  • Hsa-Mir-548a-1 3
  • MIRN548A1 3

External Ids for MIR548A1 Gene

ORGUL Members for MIR548A1 Gene

Previous HGNC Symbols for MIR548A1 Gene

  • MIRN548A1

Previous GeneCards Identifiers for MIR548A1 Gene

  • GC06P018680

Summaries for MIR548A1 Gene

Entrez Gene Summary for MIR548A1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR548A1 Gene

MIR548A1 (MicroRNA 548a-1) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR548A1 Gene

Genomics for MIR548A1 Gene

Regulatory Elements for MIR548A1 Gene

Enhancers for MIR548A1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G018584 1.3 Ensembl ENCODE 0.4 +13.4 13442 1.2 FOXA2 PKNOX1 ARNT ARID4B FEZF1 ZNF2 ZNF766 FOS JUNB REST NUP153 MIR548A1 LOC105374957
GH06G018662 1.4 VISTA 0.1 +91.4 91400 1.2 SMARCA4 LOC105374957 MIR548A1
GH06G018612 0.4 VISTA 0.3 +41.7 41731 2.2 PRDM1 MIR548A1 LOC105374957
GH06G018626 0.3 FANTOM5 0.2 +55.0 54987 0.3 MIR548A1 LOC105374957
GH06G018717 0.4 Ensembl 0.1 +145.6 145617 0.8 FOS LOC105374957 MIR548A1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR548A1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR548A1 Gene

Chromosome:
6
Start:
18,571,784 bp from pter
End:
18,571,880 bp from pter
Size:
97 bases
Orientation:
Plus strand

Genomic View for MIR548A1 Gene

Genes around MIR548A1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR548A1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR548A1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR548A1 Gene

Proteins for MIR548A1 Gene

Post-translational modifications for MIR548A1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR548A1 Gene

Domains & Families for MIR548A1 Gene

Gene Families for MIR548A1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR548A1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR548A1 Gene

Function for MIR548A1 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR548A1 Gene

Localization for MIR548A1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR548A1 Gene

Pathways & Interactions for MIR548A1 Gene

SuperPathways for MIR548A1 Gene

No Data Available

Interacting Proteins for MIR548A1 Gene

Gene Ontology (GO) - Biological Process for MIR548A1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR548A1 Gene

Drugs & Compounds for MIR548A1 Gene

No Compound Related Data Available

Transcripts for MIR548A1 Gene

mRNA/cDNA for MIR548A1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR548A1 Gene

No ASD Table

Relevant External Links for MIR548A1 Gene

GeneLoc Exon Structure for
MIR548A1
ECgene alternative splicing isoforms for
MIR548A1

Expression for MIR548A1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR548A1 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR548A1 Gene:

MIR548A1
genes like me logo Genes that share expression patterns with MIR548A1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR548A1 Gene

Orthologs for MIR548A1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR548A1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-548a-1 35
  • 98 (a)
OneToOne
Species where no ortholog for MIR548A1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR548A1 Gene

ENSEMBL:
Gene Tree for MIR548A1 (if available)
TreeFam:
Gene Tree for MIR548A1 (if available)

Paralogs for MIR548A1 Gene

No data available for Paralogs for MIR548A1 Gene

Variants for MIR548A1 Gene

Sequence variations from dbSNP and Humsavar for MIR548A1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000255582 -- 18,570,600(+) AAGAG(A/G/T)TGGCT intron-variant, upstream-variant-2KB
rs1000275548 -- 18,570,024(+) AGTCT(A/G)GAGTT intron-variant, upstream-variant-2KB
rs1001411609 -- 18,571,317(+) TCTCC(C/T)GGGTT intron-variant, upstream-variant-2KB
rs1002831529 -- 18,572,100(+) TGCCT(C/T)GTGTC intron-variant, downstream-variant-500B
rs1004484046 -- 18,570,179(+) TGTGT(A/G)TAACT intron-variant, upstream-variant-2KB

Relevant External Links for MIR548A1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR548A1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR548A1 Gene

Disorders for MIR548A1 Gene

Relevant External Links for MIR548A1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR548A1

No disorders were found for MIR548A1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR548A1 Gene

Publications for MIR548A1 Gene

  1. A mammalian microRNA expression atlas based on small RNA library sequencing. (PMID: 17604727) Landgraf P. … Tuschl T. (Cell 2007) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64
  3. The colorectal microRNAome. (PMID: 16505370) Cummins J.M. … Velculescu V.E. (Proc. Natl. Acad. Sci. U.S.A. 2006) 3 64

Products for MIR548A1 Gene

Sources for MIR548A1 Gene

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