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Aliases for MIR544B Gene

Subcategory (RNA class) for MIR544B Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR544B Gene

  • MicroRNA 544b 2 3 5
  • Hsa-Mir-544b 3

External Ids for MIR544B Gene

Previous GeneCards Identifiers for MIR544B Gene

  • GC03U901627
  • GC03P124451

Summaries for MIR544B Gene

Entrez Gene Summary for MIR544B Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR544B Gene

MIR544B (MicroRNA 544b) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR544B Gene

Genomics for MIR544B Gene

Regulatory Elements for MIR544B Gene

Promoters for MIR544B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around MIR544B on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR544B Gene

Chromosome:
3
Start:
124,732,439 bp from pter
End:
124,732,516 bp from pter
Size:
78 bases
Orientation:
Plus strand

Genomic View for MIR544B Gene

Genes around MIR544B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR544B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR544B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR544B Gene

Proteins for MIR544B Gene

Post-translational modifications for MIR544B Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR544B Gene

Domains & Families for MIR544B Gene

Gene Families for MIR544B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR544B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR544B Gene

Function for MIR544B Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR544B Gene

Localization for MIR544B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR544B Gene

Pathways & Interactions for MIR544B Gene

SuperPathways for MIR544B Gene

No Data Available

Interacting Proteins for MIR544B Gene

Gene Ontology (GO) - Biological Process for MIR544B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR544B Gene

Drugs & Compounds for MIR544B Gene

No Compound Related Data Available

Transcripts for MIR544B Gene

mRNA/cDNA for MIR544B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR544B Gene

No ASD Table

Relevant External Links for MIR544B Gene

GeneLoc Exon Structure for
MIR544B
ECgene alternative splicing isoforms for
MIR544B

Expression for MIR544B Gene

mRNA expression in normal human tissues for MIR544B Gene

genes like me logo Genes that share expression patterns with MIR544B: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for MIR544B Gene

Orthologs for MIR544B Gene

This gene was present in the common ancestor of mammals.

Orthologs for MIR544B Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia -- 36
  • 53 (a)
ManyToMany
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 97 (a)
OneToOne
Species with no ortholog for MIR544B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR544B Gene

ENSEMBL:
Gene Tree for MIR544B (if available)
TreeFam:
Gene Tree for MIR544B (if available)

Paralogs for MIR544B Gene

No data available for Paralogs for MIR544B Gene

Variants for MIR544B Gene

Relevant External Links for MIR544B Gene

HapMap Linkage Disequilibrium report
MIR544B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR544B Gene

Disorders for MIR544B Gene

Relevant External Links for MIR544B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR544B

No disorders were found for MIR544B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR544B Gene

Publications for MIR544B Gene

  1. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark M.S. … Hayward N.K. (PLoS ONE 2010) 3 67
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3

Products for MIR544B Gene

Sources for MIR544B Gene

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