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Aliases for MIR544A Gene

Subcategory (RNA class) for MIR544A Gene


Quality Score for this RNA gene is


Aliases for MIR544A Gene

  • MicroRNA 544a 2 3 5
  • MicroRNA 544 2 3
  • Hsa-Mir-544a 3
  • Hsa-Mir-544 3
  • MIRN544 3
  • MIR544 3

External Ids for MIR544A Gene

ORGUL Members for MIR544A Gene

Previous HGNC Symbols for MIR544A Gene

  • MIRN544
  • MIR544

Previous GeneCards Identifiers for MIR544A Gene

  • GC14P101746
  • GC14P101785
  • GC14P101846
  • GC14P101987
  • GC14P102185
  • GC14P101260
  • GC14P101871
  • GC14P102190
  • GC14P102359

Summaries for MIR544A Gene

Entrez Gene Summary for MIR544A Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR544A Gene

MIR544A (MicroRNA 544a) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR544A Gene

Genomics for MIR544A Gene

Regulatory Elements for MIR544A Gene

Enhancers for MIR544A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F101096 1.1 FANTOM5 ENCODE 10.7 +49.7 49690 3.2 CTCF SUZ12 JUN ZIC2 ZNF335 GLIS2 ZNF366 POLR2A SCRT2 PATZ1 RTL1 LOC105370670 MEG9 MIR369 MIR409 MIR410 MIR412 MIR541 MIR656 MIR154
GH14F101215 1 ENCODE 9.9 +168.1 168067 2.8 HDGF ARID4B ZNF48 GATA2 SSRP1 ZNF658 ETV4 HNF4A KDM1A ZNF785 MIR6764 SNORD113-4 SNORD113-3 SNORD113-6 SNORD113-7 SNORD113-8 SNORD113-9 MIR543 ENSG00000222185 ENSG00000222095
GH14F101287 1 ENCODE 9.4 +240.3 240263 2.5 ATF1 MLX ZFP64 ARID4B ZNF48 YY1 SP5 NFYC MIER2 PPARG MEG3 MIR655 MIR1185-1 MIR300 MIR376C MIR654 MIR1185-2 MIR381 MIR487B MIR539
GH14F101004 0.8 Ensembl ENCODE 10.9 -43.4 -43383 2.3 GATA3 MAX MNT ZIC2 MYC TCF7L2 MIR134 MIR487A MIR154 MIR323B MIR485 MIR377 MIR496 MIR376C MIR654 MIR1185-1
GH14F101330 0.9 ENCODE 8.9 +282.2 282197 0.3 ELF3 MLX ARID4B THRB ZNF48 ZSCAN9 RAD21 RARA CREM MIXL1 MIR381 MIR487B MIR539 MIR544A MIR655 MIR889 MIR1185-1 MIR1185-2 MIR300 MIR376C
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR544A on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR544A Gene

101,048,658 bp from pter
101,048,748 bp from pter
91 bases
Plus strand

Genomic View for MIR544A Gene

Genes around MIR544A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR544A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR544A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR544A Gene

Proteins for MIR544A Gene

Post-translational modifications for MIR544A Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR544A Gene

Domains & Families for MIR544A Gene

Gene Families for MIR544A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR544A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR544A Gene

Function for MIR544A Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR544A Gene

Localization for MIR544A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR544A Gene

Pathways & Interactions for MIR544A Gene

SuperPathways for MIR544A Gene

No Data Available

Interacting Proteins for MIR544A Gene

Gene Ontology (GO) - Biological Process for MIR544A Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR544A Gene

Transcripts for MIR544A Gene

mRNA/cDNA for MIR544A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR544A Gene

No ASD Table

Relevant External Links for MIR544A Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR544A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR544A Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR544A Gene:

genes like me logo Genes that share expression patterns with MIR544A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR544A Gene

Orthologs for MIR544A Gene

This gene was present in the common ancestor of mammals.

Orthologs for MIR544A Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ptr-mir-544 35
  • 100 (a)
(Bos Taurus)
Mammalia bta-mir-544a 35
  • 98 (a)
(Canis familiaris)
Mammalia cfa-mir-544 35
  • 97 (a)
(Mus musculus)
Mammalia Mir544 35
  • 95 (a)
Species where no ortholog for MIR544A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR544A Gene

Gene Tree for MIR544A (if available)
Gene Tree for MIR544A (if available)

Paralogs for MIR544A Gene

No data available for Paralogs for MIR544A Gene

Variants for MIR544A Gene

Sequence variations from dbSNP and Humsavar for MIR544A Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs10132916 -- 101,048,034(+) GACAT(C/T)GGTGC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs10140571 -- 101,046,958(+) CTCTT(A/G)ATGCT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs10144193 -- 101,048,613(+) TGAAT(A/T)GTTGG intron-variant, upstream-variant-2KB
rs111247572 -- 101,046,763(+) GTAGC(A/C)AGGAC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs112074030 -- 101,048,569(+) GGGTG(-/TG)TGTGT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR544A Gene

Variant ID Type Subtype PubMed ID
esv3635521 CNV gain 21293372
nsv1040993 CNV gain 25217958
nsv565859 CNV gain 21841781
nsv565860 CNV gain 21841781

Relevant External Links for MIR544A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR544A Gene

Disorders for MIR544A Gene

Relevant External Links for MIR544A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR544A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR544A Gene

Publications for MIR544A Gene

  1. miR-544a induces epithelial-mesenchymal transition through the activation of WNT signaling pathway in gastric cancer. (PMID: 26264654) Yanaka Y. … Inazawa J. (Carcinogenesis 2015) 3 64
  2. Oncogenic miR-544 is an important molecular target in gastric cancer. (PMID: 22934698) Zhi Q. … Yu Y. (Anticancer Agents Med Chem 2013) 3 64
  3. A mammalian microRNA expression atlas based on small RNA library sequencing. (PMID: 17604727) Landgraf P. … Tuschl T. (Cell 2007) 3 64
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64
  5. Identification of clustered microRNAs using an ab initio prediction method. (PMID: 16274478) Sewer A. … Zavolan M. (BMC Bioinformatics 2005) 3 64

Products for MIR544A Gene

Sources for MIR544A Gene

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