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Aliases for MIR541 Gene

Subcategory (RNA class) for MIR541 Gene

undefined

Quality Score for this RNA gene is

3

Aliases for MIR541 Gene

  • MicroRNA 541 2 3 5
  • Hsa-Mir-541 3
  • Mir-541 3
  • MIRN541 3

External Ids for MIR541 Gene

ORGUL Members for MIR541 Gene

Previous HGNC Symbols for MIR541 Gene

  • MIRN541

Previous GeneCards Identifiers for MIR541 Gene

  • GC14P100839
  • GC14P100929
  • GC14P101530
  • GC14P101272
  • GC14P101888
  • GC14P102204
  • GC14P102372
  • GC14P102550

Summaries for MIR541 Gene

Entrez Gene Summary for MIR541 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR541 Gene

MIR541 (MicroRNA 541) is an RNA Gene, and is affiliated with the undefined RNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR541 Gene

Genomics for MIR541 Gene

Regulatory Elements for MIR541 Gene

Enhancers for MIR541 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14G101096 1.1 FANTOM5 ENCODE 11.4 +33.9 33853 3.2 CTCF SUZ12 JUN ZIC2 RAD21 ZNF335 GLIS2 ZNF366 GATA2 POLR2A RTL1 LOC105370670 MEG9 MIR369 MIR409 MIR410 MIR412 MIR541 MIR656 MIR154
GH14G101063 0.4 ENCODE 0.7 -0.8 -813 0.9 CTCF RAD21 MIR377 MIR541
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR541 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR541 Gene

Chromosome:
14
Start:
101,064,495 bp from pter
End:
101,064,578 bp from pter
Size:
84 bases
Orientation:
Plus strand

Genomic View for MIR541 Gene

Genes around MIR541 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR541 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR541 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR541 Gene

Proteins for MIR541 Gene

Post-translational modifications for MIR541 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR541 Gene

Domains & Families for MIR541 Gene

Gene Families for MIR541 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR541: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR541 Gene

Function for MIR541 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR541 Gene

Localization for MIR541 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR541 Gene

Pathways & Interactions for MIR541 Gene

SuperPathways for MIR541 Gene

No Data Available

Interacting Proteins for MIR541 Gene

Gene Ontology (GO) - Biological Process for MIR541 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR541 Gene

Drugs & Compounds for MIR541 Gene

No Compound Related Data Available

Transcripts for MIR541 Gene

mRNA/cDNA for MIR541 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR541 Gene

No ASD Table

Relevant External Links for MIR541 Gene

GeneLoc Exon Structure for
MIR541
ECgene alternative splicing isoforms for
MIR541

Expression for MIR541 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR541 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR541 Gene:

MIR541
genes like me logo Genes that share expression patterns with MIR541: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR541 Gene

Orthologs for MIR541 Gene

This gene was present in the common ancestor of mammals.

Orthologs for MIR541 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia bta-mir-541 35
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia -- 35
  • 88 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 70 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mir541 35
  • 69 (a)
OneToOne
Species where no ortholog for MIR541 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR541 Gene

ENSEMBL:
Gene Tree for MIR541 (if available)
TreeFam:
Gene Tree for MIR541 (if available)

Paralogs for MIR541 Gene

No data available for Paralogs for MIR541 Gene

Variants for MIR541 Gene

Sequence variations from dbSNP and Humsavar for MIR541 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs1000796691 -- 101,062,674(+) AAATA(A/G)TCAAC upstream-variant-2KB
rs1001834602 -- 101,063,859(+) GGCCC(A/G)AGATA upstream-variant-2KB
rs1002434274 -- 101,062,743(+) CAAAT(C/T)GGCAG upstream-variant-2KB
rs1002603619 -- 101,062,977(+) ATAAG(A/G)GAAAT upstream-variant-2KB
rs1003932318 -- 101,064,797(+) ATGGT(C/T)AGCCA downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR541 Gene

Variant ID Type Subtype PubMed ID
esv3635521 CNV gain 21293372
nsv1040993 CNV gain 25217958
nsv509551 CNV insertion 20534489
nsv565859 CNV gain 21841781
nsv565860 CNV gain 21841781

Relevant External Links for MIR541 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR541

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR541 Gene

Disorders for MIR541 Gene

Relevant External Links for MIR541

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR541

No disorders were found for MIR541 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR541 Gene

Publications for MIR541 Gene

  1. MiR-541-3p reverses cancer progression by directly targeting TGIF2 in non-small cell lung cancer. (PMID: 27448300) Lu Y.J. … Wang Y. (Tumour Biol. 2016) 3 64
  2. Infiltrating T cells promote prostate cancer metastasis via modulation of FGF11a89miRNA-541a89androgen receptor (AR)a89MMP9 signaling. (PMID: 25135278) Hu S. … Chang C. (Mol Oncol 2015) 3 64
  3. miRNA analysis in vitreous humor to determine the time of death: a proof-of-concept pilot study. (PMID: 23254460) Odriozola A. … Zarrabeitia M.T. (Int. J. Legal Med. 2013) 3 64
  4. OstemiR: a novel panel of microRNA biomarkers in osteoblastic and osteocytic differentiation from mesencymal stem cells. (PMID: 23533592) Eguchi T. … Calderwood S.K. (PLoS ONE 2013) 3 64
  5. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64

Products for MIR541 Gene

Sources for MIR541 Gene

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