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Aliases for MIR520F Gene

Subcategory (RNA class) for MIR520F Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR520F Gene

  • MicroRNA 520f 2 3
  • Hsa-Mir-520f 3
  • MIRN520F 3

External Ids for MIR520F Gene

ORGUL Members for MIR520F Gene

Previous HGNC Symbols for MIR520F Gene

  • MIRN520F

Previous GeneCards Identifiers for MIR520F Gene

  • GC19P058879
  • GC19P054185

Summaries for MIR520F Gene

Entrez Gene Summary for MIR520F Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR520F Gene

MIR520F (MicroRNA 520f) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR520F Gene

Genomics for MIR520F Gene

Genomic Location for MIR520F Gene

Start:
53,682,159 bp from pter
End:
53,682,245 bp from pter
Size:
87 bases
Orientation:
Plus strand

Genomic View for MIR520F Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR520F Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR520F Gene

No data available for Regulatory Elements for MIR520F Gene

Proteins for MIR520F Gene

Post-translational modifications for MIR520F Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR520F Gene

Domains for MIR520F Gene

Gene Families for MIR520F Gene

HGNC:
  • MIR :ncRNAs / Micro RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR520F: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR520F Gene

Function for MIR520F Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR520F Gene

Localization for MIR520F Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR520F Gene

Pathways for MIR520F Gene

SuperPathways for MIR520F Gene

No Data Available

Interacting Proteins for MIR520F Gene

Gene Ontology (GO) - Biological Process for MIR520F Gene

None

No data available for Pathways by source for MIR520F Gene

Transcripts for MIR520F Gene

mRNA/cDNA for MIR520F Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR520F Gene

No ASD Table

Relevant External Links for MIR520F Gene

GeneLoc Exon Structure for
MIR520F
ECgene alternative splicing isoforms for
MIR520F

Expression for MIR520F Gene

mRNA expression in normal human tissues for MIR520F Gene

genes like me logo Genes that share expressions with MIR520F: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for MIR520F Gene

Orthologs for MIR520F Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR520F Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-520f 36
  • 100 (a)
OneToOne
Species with no ortholog for MIR520F:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR520F Gene

ENSEMBL:
Gene Tree for MIR520F (if available)
TreeFam:
Gene Tree for MIR520F (if available)

Paralogs for MIR520F Gene

No data available for Paralogs for MIR520F Gene

Variants for MIR520F Gene

Sequence variations from dbSNP and Humsavar for MIR520F Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs6509808 -- 53,681,909(+) CTGGG(A/G)CTACA upstream-variant-2KB
rs7248919 -- 53,680,790(+) gtctc(A/G)aactc upstream-variant-2KB
rs7250575 -- 53,681,321(+) CCCTC(C/T)TTAAG upstream-variant-2KB
rs7257490 -- 53,682,718(+) TTGAG(A/G)TGAAC downstream-variant-500B
rs7257574 -- 53,682,688(+) GCCAC(C/T)GCGCC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for MIR520F Gene

Variant ID Type Subtype PubMed ID
esv2718812 CNV Deletion 23290073
nsv912385 CNV Gain 21882294
dgv3999n71 CNV Gain 21882294
nsv458781 CNV Gain 19166990
esv2718833 CNV Deletion 23290073

Relevant External Links for MIR520F Gene

HapMap Linkage Disequilibrium report
MIR520F

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MIR520F Gene

Disorders for MIR520F Gene

No disorders were found for MIR520F Gene.

No data available for UniProtKB/Swiss-Prot for MIR520F Gene

Publications for MIR520F Gene

  1. Identification of hundreds of conserved and nonconserved human microRNAs. (PMID: 15965474) Bentwich I. … Bentwich Z. (Nat. Genet. 2005) 3
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  3. Birth and expression evolution of mammalian microRNA genes. (PMID: 23034410) Meunier J. … Kaessmann H. (Genome Res. 2013) 3

Products for MIR520F Gene

Sources for MIR520F Gene

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