Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR520E Gene

Subcategory (RNA class) for MIR520E Gene


Quality Score for this RNA gene is


Aliases for MIR520E Gene

  • MicroRNA 520e 2 3
  • Hsa-Mir-520e 3
  • MIRN520E 3

External Ids for MIR520E Gene

ORGUL Members for MIR520E Gene

Previous HGNC Symbols for MIR520E Gene

  • MIRN520E

Previous GeneCards Identifiers for MIR520E Gene

  • GC19P058872
  • GC19P054180
  • GC19P054404
  • GC19P054481
  • GC19P053676

Summaries for MIR520E Gene

Entrez Gene Summary for MIR520E Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR520E Gene

MIR520E (MicroRNA 520e) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR520E Gene

Genomics for MIR520E Gene

Genomic Location for MIR520E Gene

53,675,711 bp from pter
53,675,797 bp from pter
87 bases
Plus strand

Genomic View for MIR520E Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR520E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR520E Gene

No data available for Regulatory Elements for MIR520E Gene

Proteins for MIR520E Gene

Post-translational modifications for MIR520E Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR520E Gene

Domains & Families for MIR520E Gene

Gene Families for MIR520E Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR520E: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR520E Gene

Function for MIR520E Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR520E Gene

Localization for MIR520E Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR520E Gene

Pathways & Interactions for MIR520E Gene

SuperPathways for MIR520E Gene

No Data Available

Interacting Proteins for MIR520E Gene

Gene Ontology (GO) - Biological Process for MIR520E Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR520E Gene

Drugs & Compounds for MIR520E Gene

No Compound Related Data Available

Transcripts for MIR520E Gene

mRNA/cDNA for MIR520E Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR520E Gene

No ASD Table

Relevant External Links for MIR520E Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR520E Gene

mRNA expression in normal human tissues for MIR520E Gene

genes like me logo Genes that share expression patterns with MIR520E: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for MIR520E Gene

Orthologs for MIR520E Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR520E Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia ptr-mir-520e 36
  • 100 (a)
Species with no ortholog for MIR520E:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR520E Gene

Gene Tree for MIR520E (if available)
Gene Tree for MIR520E (if available)

Paralogs for MIR520E Gene

No data available for Paralogs for MIR520E Gene

Variants for MIR520E Gene

Sequence variations from dbSNP and Humsavar for MIR520E Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs7250016 -- 53,675,675(+) CAAGG(A/C)AACCA upstream-variant-2KB
rs10409916 -- 53,675,996(+) GGACT(A/G)TAATA downstream-variant-500B
rs11669941 -- 53,675,087(+) ACAGG(A/C/T)GTGAG upstream-variant-2KB
rs28446882 -- 53,675,194(+) GGCAT(A/G)ATCTC upstream-variant-2KB
rs28489560 -- 53,674,941(+) GCCTC(C/T)CGAGT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR520E Gene

Variant ID Type Subtype PubMed ID
esv2718812 CNV Deletion 23290073
nsv912385 CNV Gain 21882294
dgv3999n71 CNV Gain 21882294
nsv458781 CNV Gain 19166990

Relevant External Links for MIR520E Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR520E Gene

Disorders for MIR520E Gene

Relevant External Links for MIR520E

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with MIR520E: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR520E Gene

Publications for MIR520E Gene

  1. miRNA and protein expression profiles of visceral adipose tissue reveal miR-141/YWHAG and miR-520e/RAB11A as two potential miRNA/protein target pairs associated with severe obesity. (PMID: 22537031) Capobianco V. … Sacchetti L. (J. Proteome Res. 2012) 67
  2. MicroRNA-520e suppresses growth of hepatoma cells by targeting the NF-I_B-inducing kinase (NIK). (PMID: 22105365) Zhang S. … Zhang X. (Oncogene 2012) 67
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 67
  4. Identification of hundreds of conserved and nonconserved human microRNAs. (PMID: 15965474) Bentwich I. … Bentwich Z. (Nat. Genet. 2005) 67

Products for MIR520E Gene

Sources for MIR520E Gene

Back to Top