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Aliases for MIR520D Gene

Subcategory (RNA class) for MIR520D Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR520D Gene

  • MicroRNA 520d 2 3 5
  • Hsa-Mir-520d 3
  • MIRN520D 3

External Ids for MIR520D Gene

ORGUL Members for MIR520D Gene

Previous HGNC Symbols for MIR520D Gene

  • MIRN520D

Previous GeneCards Identifiers for MIR520D Gene

  • GC19P058944
  • GC19P059007
  • GC19P054228
  • GC19P054236
  • GC19P054272
  • GC19P054321
  • GC19P054342
  • GC19P054413
  • GC19P054488

Summaries for MIR520D Gene

Entrez Gene Summary for MIR520D Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR520D Gene

MIR520D (MicroRNA 520d) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR520D Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR520D Gene

Genomics for MIR520D Gene

Regulatory Elements for MIR520D Gene

Enhancers for MIR520D Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H053840 1.2 Ensembl ENCODE 10.5 +122.0 122033 2 PKNOX1 ATF1 ARNT ARID4B SIN3A ZNF143 FOS ATF7 SP3 REST LOC105372457 ENSG00000232220 PRKCG CACNG6 MIR935 MIR1283-1 MIR520A MIR515-2 MIR519C MIR515-1
GH19H053844 1.1 FANTOM5 Ensembl ENCODE 10.5 +125.0 124998 0 ZNF121 HLF CEBPB CEBPG ATF2 LOC105372457 PRKCG ENSG00000232220 MIR935 CACNG6 MIR520A MIR1283-1 MIR519C MIR515-1 MIR519E
GH19H053659 1 ENCODE dbSUPER 11.1 -58.8 -58821 2 ELF3 SOX5 SOX13 GATAD2A SAP130 SP5 PPARG ETV4 CREB1 POU5F1 MIR515-2 MIR1283-1 MIR519C MIR520A MIR519B MIR526B MIR518F MIR520B MIR525 MIR518B
GH19H053611 1 ENCODE dbSUPER 10.8 -107.1 -107131 3 SOX13 ESRRA FOXA2 TEAD3 CTBP1 GATA3 POLR2A NR2F6 SMARCE1 SOX5 MIR520A RNU6-698P MIR519B MIR525 MIR526B MIR518B MIR518F MIR520B MIR520C MIR526A1
GH19H053898 0.9 Ensembl ENCODE 10.6 +178.7 178747 1 PKNOX1 MAZ SP3 KLF1 ZNF740 SP2 REST SP1 POLR2A PATZ1 LOC105372457 ENSG00000232324 MYADM MIR935 CACNG6 MIR520A MIR516A2 RNU6-1041P MIR519A1 RNU6-751P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR520D on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR520D Gene

Chromosome:
19
Start:
53,720,096 bp from pter
End:
53,720,182 bp from pter
Size:
87 bases
Orientation:
Plus strand

Genomic View for MIR520D Gene

Genes around MIR520D on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR520D Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR520D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR520D Gene

Proteins for MIR520D Gene

Post-translational modifications for MIR520D Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR520D Gene

Domains & Families for MIR520D Gene

Gene Families for MIR520D Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR520D: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR520D Gene

Function for MIR520D Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for MIR520D
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR520D Gene

Localization for MIR520D Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR520D Gene

Pathways & Interactions for MIR520D Gene

SuperPathways for MIR520D Gene

No Data Available

Interacting Proteins for MIR520D Gene

Gene Ontology (GO) - Biological Process for MIR520D Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR520D Gene

Drugs & Compounds for MIR520D Gene

No Compound Related Data Available

Transcripts for MIR520D Gene

mRNA/cDNA for MIR520D Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for MIR520D
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MIR520D Gene

No ASD Table

Relevant External Links for MIR520D Gene

GeneLoc Exon Structure for
MIR520D
ECgene alternative splicing isoforms for
MIR520D

Expression for MIR520D Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR520D Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR520D Gene:

MIR520D
genes like me logo Genes that share expression patterns with MIR520D: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR520D Gene

Orthologs for MIR520D Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR520D Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-520d 34
  • 99 (a)
OneToOne
Species where no ortholog for MIR520D was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR520D Gene

ENSEMBL:
Gene Tree for MIR520D (if available)
TreeFam:
Gene Tree for MIR520D (if available)

Paralogs for MIR520D Gene

No data available for Paralogs for MIR520D Gene

Variants for MIR520D Gene

Sequence variations from dbSNP and Humsavar for MIR520D Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000487176 -- 53,719,137(+) CCAAT(G/T)TTTTC upstream-variant-2KB
rs1000706018 -- 53,718,940(+) CAGGG(A/G)GCGGA upstream-variant-2KB
rs1003178059 -- 53,719,797(+) TTTAC(A/C/G)GATGA upstream-variant-2KB
rs1004131479 -- 53,719,369(+) TTACA(A/G)GCATA upstream-variant-2KB
rs1004421066 -- 53,719,114(+) GGCCC(A/G)TGGTA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR520D Gene

Variant ID Type Subtype PubMed ID
esv2718812 CNV deletion 23290073
esv2718833 CNV deletion 23290073
esv2718837 CNV deletion 23290073
esv2762049 CNV gain 21179565
nsv458781 CNV gain 19166990
nsv580108 CNV gain 21841781
nsv961246 CNV duplication 23825009

Relevant External Links for MIR520D Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR520D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR520D Gene

Disorders for MIR520D Gene

Relevant External Links for MIR520D

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR520D

No disorders were found for MIR520D Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR520D Gene

Publications for MIR520D Gene

  1. Hsa-miR-520d induces hepatoma cells to form normal liver tissues via a stemness-mediated process. (PMID: 24458129) Tsuno S … Miura N (Scientific reports 2014) 3 60
  2. MicroRNA 520d-3p inhibits gastric cancer cell proliferation, migration, and invasion by downregulating EphA2 expression. (PMID: 25063221) Li R … Chen Z (Molecular and cellular biochemistry 2014) 3 60
  3. MiR-520d-5p directly targets TWIST1 and downregulates the metastamiR miR-10b. (PMID: 25426550) Tsukerman P … Mandelboim O (Oncotarget 2014) 3 60
  4. Comparison of inflammatory microRNA expression in healthy and periodontitis tissues. (PMID: 22128589) Lee YH … Chung J (Biocell : official journal of the Sociedades Latinoamericanas de Microscopia Electronica ... et. al 2011) 3 60
  5. A mammalian microRNA expression atlas based on small RNA library sequencing. (PMID: 17604727) Landgraf P … Tuschl T (Cell 2007) 3 60

Products for MIR520D Gene

Sources for MIR520D Gene

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