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Aliases for MIR519D Gene

Subcategory (RNA class) for MIR519D Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR519D Gene

  • MicroRNA 519d 2 3 5
  • Hsa-Mir-519d 3
  • Mir-519d 3
  • MIRN519D 3

External Ids for MIR519D Gene

ORGUL Members for MIR519D Gene

Previous HGNC Symbols for MIR519D Gene

  • MIRN519D

Previous GeneCards Identifiers for MIR519D Gene

  • GC19P058941
  • GC19P059005
  • GC19P054217
  • GC19P054220
  • GC19P054269
  • GC19P054317
  • GC19P054336
  • GC19P054409
  • GC19P054484

Summaries for MIR519D Gene

Entrez Gene Summary for MIR519D Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR519D Gene

MIR519D (MicroRNA 519d) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR519D Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR519D Gene

Genomics for MIR519D Gene

GeneHancer (GH) Regulatory Elements for MIR519D Gene

Promoters and enhancers for MIR519D Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I053840 Enhancer 1.1 Ensembl ENCODE 10.5 +128.8 128782 2.7 PKNOX1 ATF1 ARNT ARID4B SIN3A ZNF143 FOS ATF7 SP3 REST LOC105372457 ENSG00000232220 PRKCG CACNG6 MIR935 MIR1283-1 MIR520A MIR515-2 MIR519C MIR515-1
GH19I053659 Enhancer 0.9 ENCODE dbSUPER 11.1 -52.1 -52072 2.7 ELF3 SOX13 FOXA2 SAP130 NR2F6 CREM GATAD2A SOX5 SP5 PPARG MIR515-2 MIR1283-1 MIR519C MIR520A MIR519B MIR526B MIR518F MIR520B MIR525 MIR518B
GH19I053611 Enhancer 0.9 ENCODE dbSUPER 10.8 -100.4 -100382 3.1 SOX13 ESRRA USF1 FOXA2 NEUROD1 TEAD3 CTBP1 GATA3 POLR2A NR2F6 MIR520A RNU6-698P MIR519B MIR525 MIR526B MIR518B MIR518F MIR520B MIR520C MIR526A1
GH19I053898 Enhancer 0.9 Ensembl ENCODE 10.6 +185.5 185495 1.3 KLF1 PKNOX1 BACH1 ZNF335 POLR2A PATZ1 PRDM10 KLF8 KLF13 SP3 LOC105372457 ENSG00000232324 MYADM MIR935 CACNG6 MIR520A RNU6-1041P MIR516A2 MIR519A1 RNU6-751P
GH19I053844 Enhancer 0.9 FANTOM5 Ensembl ENCODE 10.5 +131.7 131747 0.6 ZNF121 HLF CEBPB CEBPG ATF2 LOC105372457 ENSG00000232220 PRKCG MIR935 CACNG6 MIR520A MIR1283-1 MIR519C MIR515-1 MIR519E
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR519D on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR519D Gene

Genomic Locations for MIR519D Gene
chr19:53,713,347-53,713,434
(GRCh38/hg38)
Size:
88 bases
Orientation:
Plus strand
chr19:54,216,601-54,216,688
(GRCh37/hg19)

Genomic View for MIR519D Gene

Genes around MIR519D on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR519D Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR519D Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR519D Gene

Proteins for MIR519D Gene

Post-translational modifications for MIR519D Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR519D Gene

Domains & Families for MIR519D Gene

Gene Families for MIR519D Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR519D: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR519D Gene

Function for MIR519D Gene

Gene Ontology (GO) - Molecular Function for MIR519D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:1903231 mRNA binding involved in posttranscriptional gene silencing IDA 20190813
genes like me logo Genes that share ontologies with MIR519D: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR519D Gene

Localization for MIR519D Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR519D Gene

Pathways & Interactions for MIR519D Gene

SuperPathways for MIR519D Gene

No Data Available

Interacting Proteins for MIR519D Gene

Gene Ontology (GO) - Biological Process for MIR519D Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008284 positive regulation of cell proliferation IMP 20190813
GO:0035195 gene silencing by miRNA IDA 20190813
GO:1900087 positive regulation of G1/S transition of mitotic cell cycle IMP 20190813
genes like me logo Genes that share ontologies with MIR519D: view

No data available for Pathways by source and SIGNOR curated interactions for MIR519D Gene

Drugs & Compounds for MIR519D Gene

No Compound Related Data Available

Transcripts for MIR519D Gene

mRNA/cDNA for MIR519D Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR519D Gene

No ASD Table

Relevant External Links for MIR519D Gene

GeneLoc Exon Structure for
MIR519D
ECgene alternative splicing isoforms for
MIR519D

Expression for MIR519D Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR519D Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR519D Gene:

MIR519D
genes like me logo Genes that share expression patterns with MIR519D: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR519D Gene

Orthologs for MIR519D Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR519D Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-519d 34
  • 99 (a)
OneToOne
Species where no ortholog for MIR519D was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR519D Gene

ENSEMBL:
Gene Tree for MIR519D (if available)
TreeFam:
Gene Tree for MIR519D (if available)

Paralogs for MIR519D Gene

No data available for Paralogs for MIR519D Gene

Variants for MIR519D Gene

Sequence variations from dbSNP and Humsavar for MIR519D Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000080975 -- 53,713,152(+) G/A upstream_transcript_variant
rs1001340575 -- 53,713,750(+) C/A downstream_transcript_variant
rs1003421909 -- 53,711,394(+) T/A upstream_transcript_variant
rs1003963849 -- 53,711,533(+) C/T upstream_transcript_variant
rs1004702301 -- 53,711,997(+) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR519D Gene

Variant ID Type Subtype PubMed ID
esv2718812 CNV deletion 23290073
esv2718833 CNV deletion 23290073
esv2718836 CNV deletion 23290073
esv2762049 CNV gain 21179565
nsv458781 CNV gain 19166990
nsv580108 CNV gain 21841781
nsv961246 CNV duplication 23825009

Additional Variant Information for MIR519D Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR519D

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR519D Gene

Disorders for MIR519D Gene

Additional Disease Information for MIR519D

No disorders were found for MIR519D Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR519D Gene

Publications for MIR519D Gene

  1. E2F-1 targets miR-519d to regulate the expression of the ras homolog gene family member C. (PMID: 28146423) Sang XB … Zhao Y (Oncotarget 2017) 3 58
  2. MiR-519d impedes cisplatin-resistance in breast cancer stem cells by down-regulating the expression of MCL-1. (PMID: 28423543) Xie Q … Yang X (Oncotarget 2017) 3 58
  3. The function of miR-519d in cell migration, invasion, and proliferation suggests a role in early placentation. (PMID: 27871470) Xie L … Sadovsky Y (Placenta 2016) 3 58
  4. Resistin promotes tumor metastasis by down-regulation of miR-519d through the AMPK/p38 signaling pathway in human chondrosarcoma cells. (PMID: 25404641) Tsai CH … Tang CH (Oncotarget 2015) 3 58
  5. MiR-519d-3p suppresses invasion and migration of trophoblast cells via targeting MMP-2. (PMID: 25803859) Ding J … Zhu X (PloS one 2015) 3 58

Products for MIR519D Gene

Sources for MIR519D Gene

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