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Aliases for MIR5189 Gene

Subcategory (RNA class) for MIR5189 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR5189 Gene

  • MicroRNA 5189 2 3 5
  • Hsa-Mir-5189 3
  • Mir-5189 3

External Ids for MIR5189 Gene

Previous GeneCards Identifiers for MIR5189 Gene

  • GC16U901385

Summaries for MIR5189 Gene

Entrez Gene Summary for MIR5189 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5189 Gene

MIR5189 (MicroRNA 5189) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR5189 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5189 Gene

Genomics for MIR5189 Gene

Regulatory Elements for MIR5189 Gene

Enhancers for MIR5189 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H088468 1.6 FANTOM5 ENCODE dbSUPER 0.7 +2.5 2544 6 PKNOX1 SIN3A YY1 TCF12 GATA2 ATF7 NFYC REST ZNF592 SMARCA4 ZC3H18 ENSG00000268218 LINC00304 ENSG00000259877 BANP RNF166 ZFPM1 LOC100128882 APRT CTU2
GH16H088464 1.3 Ensembl ENCODE dbSUPER 0.7 -4.2 -4194 2 BCOR HDAC1 PTBP1 TAL1 JUN MAX FOSL1 CCNT2 GATA2 ADNP ZFPM1 LOC100128882 MIR5189
GH16H088452 1.7 FANTOM5 ENCODE dbSUPER 0.4 -14.0 -13982 6 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B SLC30A9 RNF166 ZC3H18 ZFPM1 ZCCHC14 ENSG00000260121 SNAI3 MIR5189
GH16H088466 0.9 Ensembl dbSUPER 0.7 -2.3 -2338 0 BCOR SMARCA5 PTBP1 ZMYM3 NFXL1 ATF2 HDAC2 ZNF143 ATF7 KDM1A MIR5189 ZFPM1
GH16H088478 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +10.6 10596 2 BCOR ZMYM3 EBF1 ZFHX2 ZNF366 POLR2A ZNF341 ZNF143 ZBTB33 KDM1A ZFPM1 MIR5189 LOC100128882
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR5189 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR5189 Gene

Chromosome:
16
Start:
88,468,918 bp from pter
End:
88,469,031 bp from pter
Size:
114 bases
Orientation:
Plus strand

Genomic View for MIR5189 Gene

Genes around MIR5189 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5189 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5189 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5189 Gene

Proteins for MIR5189 Gene

Post-translational modifications for MIR5189 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5189 Gene

Domains & Families for MIR5189 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5189 Gene

Function for MIR5189 Gene

Phenotypes From GWAS Catalog for MIR5189 Gene

Animal Model Products

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR5189
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5189 Gene

Localization for MIR5189 Gene

Gene Ontology (GO) - Cellular Components for MIR5189 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 26646931
genes like me logo Genes that share ontologies with MIR5189: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for MIR5189 Gene

Pathways & Interactions for MIR5189 Gene

SuperPathways for MIR5189 Gene

No Data Available

Interacting Proteins for MIR5189 Gene

Gene Ontology (GO) - Biological Process for MIR5189 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR5189 Gene

Drugs & Compounds for MIR5189 Gene

No Compound Related Data Available

Transcripts for MIR5189 Gene

mRNA/cDNA for MIR5189 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR5189
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5189 Gene

No ASD Table

Relevant External Links for MIR5189 Gene

GeneLoc Exon Structure for
MIR5189
ECgene alternative splicing isoforms for
MIR5189

Expression for MIR5189 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR5189 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5189 Gene:

MIR5189
genes like me logo Genes that share expression patterns with MIR5189: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR5189 Gene

Orthologs for MIR5189 Gene

Evolution for MIR5189 Gene

ENSEMBL:
Gene Tree for MIR5189 (if available)
TreeFam:
Gene Tree for MIR5189 (if available)

No data available for Orthologs for MIR5189 Gene

Paralogs for MIR5189 Gene

No data available for Paralogs for MIR5189 Gene

Variants for MIR5189 Gene

Sequence variations from dbSNP and Humsavar for MIR5189 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1003723896 -- 88,468,534(+) CACTC(A/G)GAGTC intron-variant, upstream-variant-2KB
rs1004096185 -- 88,468,842(+) TTGAC(C/T)TGGGG intron-variant, upstream-variant-2KB
rs1004846062 -- 88,468,880(+) CAGGA(C/T)GGGAG intron-variant, upstream-variant-2KB
rs1005345784 -- 88,468,224(+) CCGCC(C/T)CTCAA intron-variant, upstream-variant-2KB
rs1005917467 -- 88,468,403(+) AAAAT(A/G)AGAAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR5189 Gene

Variant ID Type Subtype PubMed ID
dgv171n21 CNV loss 19592680
dgv5293n54 CNV loss 21841781
esv2758669 CNV gain 17122850
nsv1061590 CNV gain 25217958
nsv471111 CNV loss 18288195
nsv471112 CNV gain 18288195
nsv528456 CNV loss 19592680
nsv817747 CNV loss 17921354
nsv952070 CNV deletion 24416366

Relevant External Links for MIR5189 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR5189

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR5189 Gene

Disorders for MIR5189 Gene

Relevant External Links for MIR5189

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR5189

No disorders were found for MIR5189 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5189 Gene

Publications for MIR5189 Gene

  1. Association of MicroRNAs and YRNAs With Platelet Function. (PMID: 26646931) Kaudewitz D … Mayr M (Circulation research 2016) 3 60
  2. The repertoire and features of human platelet microRNAs. (PMID: 23226537) Plé H … Provost P (PloS one 2012) 3 60
  3. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 60
  4. Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia. (PMID: 21606961) Schotte D … den Boer ML (Leukemia 2011) 3 60
  5. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR5189 Gene

Sources for MIR5189 Gene

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