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Aliases for MIR5047 Gene

Subcategory (RNA class) for MIR5047 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR5047 Gene

  • MicroRNA 5047 2 3 5
  • Hsa-Mir-5047 3

External Ids for MIR5047 Gene

Previous GeneCards Identifiers for MIR5047 Gene

  • GC17U901654
  • GC17M062501

Summaries for MIR5047 Gene

Entrez Gene Summary for MIR5047 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5047 Gene

MIR5047 (MicroRNA 5047) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are Circadian rythm related genes and Gene Expression.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5047 Gene

Genomics for MIR5047 Gene

Regulatory Elements for MIR5047 Gene

Enhancers for MIR5047 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G064501 1.4 ENCODE dbSUPER 0.7 -3.5 -3460 7.7 CREB3L1 FEZF1 DMAP1 YBX1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 DDX5 DDX42 CEP95 ENSG00000265982 PLEKHM1P1 MILR1 POLG2 ENSG00000265912 MIR5047
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR5047 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR5047 Gene

Chromosome:
17
Start:
64,501,214 bp from pter
End:
64,501,313 bp from pter
Size:
100 bases
Orientation:
Minus strand

Genomic View for MIR5047 Gene

Genes around MIR5047 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5047 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5047 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5047 Gene

Proteins for MIR5047 Gene

Post-translational modifications for MIR5047 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5047 Gene

Domains & Families for MIR5047 Gene

Gene Families for MIR5047 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR5047: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5047 Gene

Function for MIR5047 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5047 Gene

Localization for MIR5047 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR5047 Gene

Pathways & Interactions for MIR5047 Gene

genes like me logo Genes that share pathways with MIR5047: view

Pathways by source for MIR5047 Gene

Interacting Proteins for MIR5047 Gene

Gene Ontology (GO) - Biological Process for MIR5047 Gene

None

No data available for SIGNOR curated interactions for MIR5047 Gene

Drugs & Compounds for MIR5047 Gene

No Compound Related Data Available

Transcripts for MIR5047 Gene

mRNA/cDNA for MIR5047 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5047 Gene

No ASD Table

Relevant External Links for MIR5047 Gene

GeneLoc Exon Structure for
MIR5047
ECgene alternative splicing isoforms for
MIR5047

Expression for MIR5047 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR5047 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5047 Gene:

MIR5047
genes like me logo Genes that share expression patterns with MIR5047: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR5047 Gene

Orthologs for MIR5047 Gene

Evolution for MIR5047 Gene

ENSEMBL:
Gene Tree for MIR5047 (if available)
TreeFam:
Gene Tree for MIR5047 (if available)

No data available for Orthologs for MIR5047 Gene

Paralogs for MIR5047 Gene

No data available for Paralogs for MIR5047 Gene

Variants for MIR5047 Gene

Sequence variations from dbSNP and Humsavar for MIR5047 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1002450072 -- 64,502,274(+) TCAGA(C/T)TCCAG intron-variant, upstream-variant-2KB
rs1017934320 -- 64,500,972(+) CTGTA(G/T)AATTC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1026440541 -- 64,502,647(+) TTACA(C/T)GGCTG intron-variant, upstream-variant-2KB
rs1026829610 -- 64,502,336(+) AGTTA(A/G)ATTCA intron-variant, upstream-variant-2KB
rs1031043930 -- 64,501,551(+) ATTGA(A/C)GTTTG intron-variant, upstream-variant-2KB

Relevant External Links for MIR5047 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR5047

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR5047 Gene

Disorders for MIR5047 Gene

Relevant External Links for MIR5047

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR5047

No disorders were found for MIR5047 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5047 Gene

Publications for MIR5047 Gene

  1. An evolutionarily conserved, alternatively spliced, intron in the p68/DDX5 DEAD-box RNA helicase gene encodes a novel miRNA. (PMID: 21346006) Moore H.C. … Fuller-Pace F.V. (RNA 2011) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR5047 Gene

Sources for MIR5047 Gene

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