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Aliases for MIR5009 Gene

Subcategory (RNA class) for MIR5009 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR5009 Gene

  • MicroRNA 5009 2 3 5
  • Hsa-Mir-5009 3

External Ids for MIR5009 Gene

Previous GeneCards Identifiers for MIR5009 Gene

  • GC15U901430
  • GC15M090433
  • GC15M090437
  • GC15M090440

Summaries for MIR5009 Gene

Entrez Gene Summary for MIR5009 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5009 Gene

MIR5009 (MicroRNA 5009) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR5009 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5009 Gene

Genomics for MIR5009 Gene

Genomic Location for MIR5009 Gene

Chromosome:
15
Start:
89,883,931 bp from pter
End:
89,884,030 bp from pter
Size:
100 bases
Orientation:
Minus strand

Genomic View for MIR5009 Gene

Genes around MIR5009 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5009 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5009 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5009 Gene

ORGUL Member Location for MIR5009 Gene

ORGUL Member Location for MIR5009 gene

No data available for Regulatory Elements for MIR5009 Gene

Proteins for MIR5009 Gene

Post-translational modifications for MIR5009 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5009 Gene

Domains & Families for MIR5009 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5009 Gene

Function for MIR5009 Gene

Animal Model Products

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR5009
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5009 Gene

Localization for MIR5009 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR5009 Gene

Pathways & Interactions for MIR5009 Gene

SuperPathways for MIR5009 Gene

No Data Available

Interacting Proteins for MIR5009 Gene

Gene Ontology (GO) - Biological Process for MIR5009 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR5009 Gene

Drugs & Compounds for MIR5009 Gene

No Compound Related Data Available

Transcripts for MIR5009 Gene

mRNA/cDNA for MIR5009 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR5009
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5009 Gene

No ASD Table

Relevant External Links for MIR5009 Gene

GeneLoc Exon Structure for
MIR5009
ECgene alternative splicing isoforms for
MIR5009

Expression for MIR5009 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR5009 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5009 Gene:

MIR5009
genes like me logo Genes that share expression patterns with MIR5009: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR5009 Gene

Orthologs for MIR5009 Gene

Evolution for MIR5009 Gene

ENSEMBL:
Gene Tree for MIR5009 (if available)
TreeFam:
Gene Tree for MIR5009 (if available)

No data available for Orthologs for MIR5009 Gene

Paralogs for MIR5009 Gene

No data available for Paralogs for MIR5009 Gene

Variants for MIR5009 Gene

Sequence variations from dbSNP and Humsavar for MIR5009 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1001685906 -- 89,883,651(+) TGGGA(A/C)TATAG intron-variant, downstream-variant-500B
rs1004748860 -- 89,883,558(+) ATTTT(G/T)TATAG intron-variant, downstream-variant-500B
rs1005240433 -- 89,883,713(+) CCTAC(A/G)GATTT intron-variant, downstream-variant-500B
rs1006394272 -- 89,884,828(+) TATTT(G/T)TAGTA intron-variant, upstream-variant-2KB
rs1006421060 -- 89,885,120(+) AGTTC(-/T)TTTTT intron-variant, upstream-variant-2KB

Relevant External Links for MIR5009 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR5009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR5009 Gene

Disorders for MIR5009 Gene

Relevant External Links for MIR5009

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR5009

No disorders were found for MIR5009 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5009 Gene

Publications for MIR5009 Gene

  1. MiR-5000-3p, miR-5009-3P and miR-552: potential microRNA biomarkers of side population cells in colon cancer. (PMID: 24898979) Xia ZS … Chen GC (Oncology reports 2014) 3 60
  2. Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis. (PMID: 21558790) Hansen TB … Bramsen JB (RNA biology 2011) 3 60
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR5009 Gene

Sources for MIR5009 Gene

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