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Aliases for MIR5009 Gene

Subcategory (RNA class) for MIR5009 Gene


Quality Score for this RNA gene is


Aliases for MIR5009 Gene

  • MicroRNA 5009 2 3 5
  • Hsa-Mir-5009 3

External Ids for MIR5009 Gene

Previous GeneCards Identifiers for MIR5009 Gene

  • GC15U901430
  • GC15M090433
  • GC15M090437
  • GC15M090440

Summaries for MIR5009 Gene

Entrez Gene Summary for MIR5009 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5009 Gene

MIR5009 (MicroRNA 5009) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5009 Gene

Genomics for MIR5009 Gene

Regulatory Elements for MIR5009 Gene

Enhancers for MIR5009 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F089884 0.4 Ensembl 0.8 -0.6 -613 0.5 ZNF316 MAFK AP3S2 GC15M089870 MIR5009
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR5009 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR5009 Gene

89,883,931 bp from pter
89,884,030 bp from pter
100 bases
Minus strand

Genomic View for MIR5009 Gene

Genes around MIR5009 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5009 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5009 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5009 Gene

ORGUL Member Location for MIR5009 Gene

ORGUL Member Location for MIR5009 gene

Proteins for MIR5009 Gene

Post-translational modifications for MIR5009 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5009 Gene

Domains & Families for MIR5009 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5009 Gene

Function for MIR5009 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5009 Gene

Localization for MIR5009 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR5009 Gene

Pathways & Interactions for MIR5009 Gene

SuperPathways for MIR5009 Gene

No Data Available

Interacting Proteins for MIR5009 Gene

Gene Ontology (GO) - Biological Process for MIR5009 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR5009 Gene

Transcripts for MIR5009 Gene

mRNA/cDNA for MIR5009 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5009 Gene

No ASD Table

Relevant External Links for MIR5009 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR5009 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR5009 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5009 Gene:

genes like me logo Genes that share expression patterns with MIR5009: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR5009 Gene

Orthologs for MIR5009 Gene

Evolution for MIR5009 Gene

Gene Tree for MIR5009 (if available)
Gene Tree for MIR5009 (if available)

No data available for Orthologs for MIR5009 Gene

Paralogs for MIR5009 Gene

No data available for Paralogs for MIR5009 Gene

Variants for MIR5009 Gene

Sequence variations from dbSNP and Humsavar for MIR5009 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs10852123 -- 89,885,662(+) ATCag(A/C)tgggt intron-variant, upstream-variant-2KB
rs112737454 -- 89,884,479(+) GGCCA(A/G)TAAAG intron-variant, upstream-variant-2KB
rs112938664 -- 89,885,219(+) AGATA(C/G)AGTCT intron-variant, upstream-variant-2KB
rs114918567 -- 89,884,097(+) ACATA(A/T)CTATA intron-variant, upstream-variant-2KB
rs11638138 -- 89,885,523(+) GTAGT(C/T)GGCTA intron-variant, upstream-variant-2KB

Relevant External Links for MIR5009 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR5009 Gene

Disorders for MIR5009 Gene

Relevant External Links for MIR5009

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR5009 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5009 Gene

Publications for MIR5009 Gene

  1. MiR-5000-3p, miR-5009-3P and miR-552: potential microRNA biomarkers of side population cells in colon cancer. (PMID: 24898979) Xia Z.S. … Chen G.C. (Oncol. Rep. 2014) 3 64
  2. Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis. (PMID: 21558790) Hansen T.B. … Bramsen J.B. (RNA Biol 2011) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR5009 Gene

Sources for MIR5009 Gene

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