Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR5007 Gene

Subcategory (RNA class) for MIR5007 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR5007 Gene

  • MicroRNA 5007 2 3 5
  • Hsa-Mir-5007 3

External Ids for MIR5007 Gene

Previous GeneCards Identifiers for MIR5007 Gene

  • GC13U900884
  • GC13P055751

Summaries for MIR5007 Gene

Entrez Gene Summary for MIR5007 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5007 Gene

MIR5007 (MicroRNA 5007) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5007 Gene

Genomics for MIR5007 Gene

Regulatory Elements for MIR5007 Gene

Enhancers for MIR5007 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F055245 0.2 ENCODE 0.2 +70.7 70737 0.2 MIR5007 GC13P055320
GH13F055246 0.2 ENCODE 0.2 +70.9 70943 0.0 CTCF ZNF654 RAD21 MIR5007 GC13P055320
GH13F055247 0.5 ENCODE 0.2 +71.0 71047 0.2 CTCF ZNF654 RAD21 RPL13AP25 MIR5007 GC13P055320
GH13F055230 0.6 ENCODE 0.2 +56.2 56227 0.2 MIR5007 GC13P055320
GH13F055229 0.2 ENCODE 0.2 +55.7 55665 0.9 MAFK MIR5007 GC13P055320
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR5007 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR5007 Gene

Chromosome:
13
Start:
55,174,454 bp from pter
End:
55,174,548 bp from pter
Size:
95 bases
Orientation:
Plus strand

Genomic View for MIR5007 Gene

Genes around MIR5007 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5007 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5007 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5007 Gene

Proteins for MIR5007 Gene

Post-translational modifications for MIR5007 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5007 Gene

Domains & Families for MIR5007 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5007 Gene

Function for MIR5007 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5007 Gene

Localization for MIR5007 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR5007 Gene

Pathways & Interactions for MIR5007 Gene

SuperPathways for MIR5007 Gene

No Data Available

Interacting Proteins for MIR5007 Gene

Gene Ontology (GO) - Biological Process for MIR5007 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR5007 Gene

Transcripts for MIR5007 Gene

mRNA/cDNA for MIR5007 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5007 Gene

No ASD Table

Relevant External Links for MIR5007 Gene

GeneLoc Exon Structure for
MIR5007
ECgene alternative splicing isoforms for
MIR5007

Expression for MIR5007 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR5007 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5007 Gene:

MIR5007
genes like me logo Genes that share expression patterns with MIR5007: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR5007 Gene

Orthologs for MIR5007 Gene

Evolution for MIR5007 Gene

ENSEMBL:
Gene Tree for MIR5007 (if available)
TreeFam:
Gene Tree for MIR5007 (if available)

No data available for Orthologs for MIR5007 Gene

Paralogs for MIR5007 Gene

No data available for Paralogs for MIR5007 Gene

Variants for MIR5007 Gene

Sequence variations from dbSNP and Humsavar for MIR5007 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs112107842 -- 55,173,730(+) ACTCT(A/C)TATTA upstream-variant-2KB
rs114688707 -- 55,173,745(+) TGTCC(A/G)ATAGA upstream-variant-2KB
rs12865044 -- 55,174,516(+) CATAT(C/G)AACCA nc-transcript-variant
rs138084108 -- 55,174,112(+) AAAAA(-/A)GAGAT upstream-variant-2KB
rs140518246 -- 55,173,534(+) TGCAT(C/T)TCAAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR5007 Gene

Variant ID Type Subtype PubMed ID
nsv1051619 CNV loss 25217958
nsv518200 CNV loss 19592680
nsv561702 CNV gain 21841781
nsv561704 CNV gain 21841781

Relevant External Links for MIR5007 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR5007

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR5007 Gene

Disorders for MIR5007 Gene

Relevant External Links for MIR5007

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR5007

No disorders were found for MIR5007 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5007 Gene

Publications for MIR5007 Gene

  1. Genome-wide association study meta-analysis reveals transethnic replication of mean arterial and pulse pressure loci. (PMID: 24001895) Kelly T.N. … He J. (Hypertension 2013) 3 64
  2. Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis. (PMID: 21558790) Hansen T.B. … Bramsen J.B. (RNA Biol 2011) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR5007 Gene

Sources for MIR5007 Gene

Content
Loading form....