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Aliases for MIR5007 Gene

Subcategory (RNA class) for MIR5007 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR5007 Gene

  • MicroRNA 5007 2 3
  • Hsa-Mir-5007 3

External Ids for MIR5007 Gene

Summaries for MIR5007 Gene

Entrez Gene Summary for MIR5007 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5007 Gene

MIR5007 (MicroRNA 5007) is a RNA Gene, and belongs to miRNA RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5007 Gene

Genomics for MIR5007 Gene

Genomic Location for MIR5007 Gene

Start:
55,174,454 bp from pter
End:
55,174,548 bp from pter
Size:
95 bases
Orientation:
Plus strand

Genomic View for MIR5007 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR5007 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5007 Gene

No data available for Regulatory Elements for MIR5007 Gene

Proteins for MIR5007 Gene

Post-translational modifications for MIR5007 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5007 Gene

Domains for MIR5007 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for MIR5007 Gene

Function for MIR5007 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR5007 Gene

Localization for MIR5007 Gene

No data available for Gene Ontology (GO) - Cellular Components for MIR5007 Gene

Pathways for MIR5007 Gene

SuperPathways for MIR5007 Gene

No Data Available

Interacting Proteins for MIR5007 Gene

Gene Ontology (GO) - Biological Process for MIR5007 Gene

None

No data available for Pathways by source for MIR5007 Gene

Transcripts for MIR5007 Gene

mRNA/cDNA for MIR5007 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5007 Gene

No ASD Table

Relevant External Links for MIR5007 Gene

GeneLoc Exon Structure for
MIR5007
ECgene alternative splicing isoforms for
MIR5007

Expression for MIR5007 Gene

mRNA expression in normal human tissues for MIR5007 Gene

genes like me logo Genes that share expressions with MIR5007: view

Orthologs for MIR5007 Gene

Evolution for MIR5007 Gene

ENSEMBL:
Gene Tree for MIR5007 (if available)
TreeFam:
Gene Tree for MIR5007 (if available)

No data available for Orthologs for MIR5007 Gene

Paralogs for MIR5007 Gene

No data available for Paralogs for MIR5007 Gene

Variants for MIR5007 Gene

Sequence variations from dbSNP and Humsavar for MIR5007 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type MAF
rs1538420 -- 55,173,995(+) CACAT(C/G)GGGCT upstream-variant-2KB
rs1538421 -- 55,174,063(+) TATTA(G/T)TTCAT upstream-variant-2KB
rs1572687 -- 55,174,538(+) GTCAA(C/T)AATTT nc-transcript-variant
rs3125749 -- 55,173,199(+) ATGCC(A/C)TACAA upstream-variant-2KB
rs4315251 -- 55,173,631(+) TGCAA(A/G)CATAA upstream-variant-2KB

Relevant External Links for MIR5007 Gene

HapMap Linkage Disequilibrium report
MIR5007

No data available for Structural Variations from Database of Genomic Variants (DGV) for MIR5007 Gene

Disorders for MIR5007 Gene

No disorders were found for MIR5007 Gene.

No data available for UniProtKB/Swiss-Prot for MIR5007 Gene

Publications for MIR5007 Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis. (PMID: 21558790) Hansen T.B. … Bramsen J.B. (RNA Biol 2011) 3
  3. Genome-wide association study meta-analysis reveals transethnic replication of mean arterial and pulse pressure loci. (PMID: 24001895) Kelly T.N. … He J. (Hypertension 2013) 3

Products for MIR5007 Gene

Sources for MIR5007 Gene

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