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Aliases for MIR5006 Gene

Subcategory (RNA class) for MIR5006 Gene


Quality Score for this RNA gene is


Aliases for MIR5006 Gene

  • MicroRNA 5006 2 3 5
  • Hsa-Mir-5006 3

External Ids for MIR5006 Gene

Previous GeneCards Identifiers for MIR5006 Gene

  • GC13U900900
  • GC13M042145

Summaries for MIR5006 Gene

Entrez Gene Summary for MIR5006 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5006 Gene

MIR5006 (MicroRNA 5006) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR5006 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5006 Gene

Genomics for MIR5006 Gene

GeneHancer (GH) Regulatory Elements for MIR5006 Gene

Promoters and enhancers for MIR5006 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I041569 Enhancer 0.4 FANTOM5 dbSUPER 550.8 -1.2 -1241 0.1 MIR5006 PIR52393 GC13M041633 VWA8
GH13I041570 Enhancer 0.2 dbSUPER 550.8 -1.0 -1007 0.2 MIR5006 PIR52393 GC13M041633 VWA8
GH13I041560 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.8 +4.8 4756 5.5 SOX13 TFAP4 FOXA2 ZBTB21 JUN FEZF1 PRDM10 NR2F6 MAFK SOX5 RGCC VWA8 MIR5006 LOC105370175 LOC105370174
GH13I041561 Enhancer 0.2 dbSUPER 0.4 +7.9 7945 0.1 LOC105370175 MIR5006 LOC105370174
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR5006 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR5006 Gene

Genomic Locations for MIR5006 Gene
110 bases
Minus strand

Genomic View for MIR5006 Gene

Genes around MIR5006 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5006 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5006 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5006 Gene

Proteins for MIR5006 Gene

Post-translational modifications for MIR5006 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5006 Gene

Domains & Families for MIR5006 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5006 Gene

Function for MIR5006 Gene

Phenotypes From GWAS Catalog for MIR5006 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5006 Gene

Localization for MIR5006 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR5006 Gene

Pathways & Interactions for MIR5006 Gene

SuperPathways for MIR5006 Gene

No Data Available

Interacting Proteins for MIR5006 Gene

Gene Ontology (GO) - Biological Process for MIR5006 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR5006 Gene

Drugs & Compounds for MIR5006 Gene

No Compound Related Data Available

Transcripts for MIR5006 Gene

mRNA/cDNA for MIR5006 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5006 Gene

No ASD Table

Relevant External Links for MIR5006 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR5006 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR5006 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5006 Gene:

genes like me logo Genes that share expression patterns with MIR5006: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR5006 Gene

Orthologs for MIR5006 Gene

Evolution for MIR5006 Gene

Gene Tree for MIR5006 (if available)
Gene Tree for MIR5006 (if available)

No data available for Orthologs for MIR5006 Gene

Paralogs for MIR5006 Gene

No data available for Paralogs for MIR5006 Gene

Variants for MIR5006 Gene

Sequence variations from dbSNP and Humsavar for MIR5006 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1001515650 -- 41,568,320(-) A/C non_coding_transcript_variant
rs1002123374 -- 41,569,744(-) C/T upstream_transcript_variant
rs1002243370 -- 41,569,359(-) G/A upstream_transcript_variant
rs1003142229 -- 41,567,905(-) C/A downstream_transcript_variant
rs1006389148 -- 41,568,432(-) C/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR5006 Gene

Variant ID Type Subtype PubMed ID
dgv1634n100 CNV gain 25217958
nsv455865 CNV gain 19166990
nsv561539 CNV gain 21841781

Additional Variant Information for MIR5006 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR5006 Gene

Disorders for MIR5006 Gene

Additional Disease Information for MIR5006

No disorders were found for MIR5006 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5006 Gene

Publications for MIR5006 Gene

  1. Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis. (PMID: 21558790) Hansen TB … Bramsen JB (RNA biology 2011) 3 58
  2. Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia. (PMID: 21606961) Schotte D … den Boer ML (Leukemia 2011) 3 58
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR5006 Gene

Sources for MIR5006 Gene

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