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Aliases for MIR5003 Gene

Subcategory (RNA class) for MIR5003 Gene


Quality Score for this RNA gene is


Aliases for MIR5003 Gene

  • MicroRNA 5003 2 3 5
  • Hsa-Mir-5003 3

External Ids for MIR5003 Gene

Previous GeneCards Identifiers for MIR5003 Gene

  • GC05U901615
  • GC05P172094

Summaries for MIR5003 Gene

Entrez Gene Summary for MIR5003 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5003 Gene

MIR5003 (MicroRNA 5003) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5003 Gene

Genomics for MIR5003 Gene

Regulatory Elements for MIR5003 Gene

Enhancers for MIR5003 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F172657 1.2 Ensembl ENCODE 0.8 -0.3 -274 8.6 PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ZNF48 YY1 GLIS2 ZNF143 SP5 NEURL1B SH3PXD2B LOC100268168 ENSG00000254295 RPL26L1 GC05P172658 MIR5003
GH05F172669 0.4 ENCODE 0.4 +6.9 6928 0.2 ZFHX2 EGR2 GC05M172673 MIR5003
GH05F172670 0.4 Ensembl 0.4 +5.9 5937 0.2 ZNF623 GC05M172673 MIR5003
GH05F172668 0.2 Ensembl 0.4 +6.3 6336 0.2 GC05M172673 MIR5003
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR5003 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR5003 Gene

172,662,165 bp from pter
172,662,263 bp from pter
99 bases
Plus strand

Genomic View for MIR5003 Gene

Genes around MIR5003 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5003 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5003 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5003 Gene

Proteins for MIR5003 Gene

Post-translational modifications for MIR5003 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5003 Gene

Domains & Families for MIR5003 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5003 Gene

Function for MIR5003 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5003 Gene

Localization for MIR5003 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR5003 Gene

Pathways & Interactions for MIR5003 Gene

SuperPathways for MIR5003 Gene

No Data Available

Interacting Proteins for MIR5003 Gene

Gene Ontology (GO) - Biological Process for MIR5003 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR5003 Gene

Transcripts for MIR5003 Gene

mRNA/cDNA for MIR5003 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5003 Gene

No ASD Table

Relevant External Links for MIR5003 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR5003 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR5003 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5003 Gene:

genes like me logo Genes that share expression patterns with MIR5003: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR5003 Gene

Orthologs for MIR5003 Gene

Evolution for MIR5003 Gene

Gene Tree for MIR5003 (if available)
Gene Tree for MIR5003 (if available)

No data available for Orthologs for MIR5003 Gene

Paralogs for MIR5003 Gene

No data available for Paralogs for MIR5003 Gene

Variants for MIR5003 Gene

Sequence variations from dbSNP and Humsavar for MIR5003 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs112891394 -- 172,662,754(+) GCCAA(C/G)GCTGG intron-variant, downstream-variant-500B
rs115216784 -- 172,660,497(+) CAGCG(C/T)GGGCT intron-variant, upstream-variant-2KB
rs115625162 -- 172,660,300(+) GGGGC(A/G)TCGGG intron-variant, upstream-variant-2KB
rs115841413 -- 172,662,521(+) CTGCC(A/G/T)GGATT intron-variant, downstream-variant-500B
rs140151696 -- 172,661,574(+) ACATG(C/T)ACCCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR5003 Gene

Variant ID Type Subtype PubMed ID
nsv600289 CNV loss 21841781
nsv600287 CNV loss 21841781
nsv523045 CNV gain 19592680
nsv441974 CNV gain 18776908
nsv1032497 CNV gain 25217958
esv3607596 CNV gain 21293372
esv34432 CNV gain 17911159
esv2763518 CNV gain 21179565
esv2759393 CNV gain 17122850
dgv729n27 CNV gain 19166990
dgv5831n100 CNV gain 25217958
dgv208e55 CNV gain 17911159
dgv10173n54 CNV gain 21841781

Relevant External Links for MIR5003 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR5003 Gene

Disorders for MIR5003 Gene

Relevant External Links for MIR5003

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR5003 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5003 Gene

Publications for MIR5003 Gene

  1. Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis. (PMID: 21558790) Hansen T.B. … Bramsen J.B. (RNA Biol 2011) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR5003 Gene

Sources for MIR5003 Gene

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