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Aliases for MIR5002 Gene

Subcategory (RNA class) for MIR5002 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR5002 Gene

  • MicroRNA 5002 2 3 5
  • Hsa-Mir-5002 3

External Ids for MIR5002 Gene

Previous GeneCards Identifiers for MIR5002 Gene

  • GC03U901838
  • GC03P123854

Summaries for MIR5002 Gene

Entrez Gene Summary for MIR5002 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5002 Gene

MIR5002 (MicroRNA 5002) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR5002 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5002 Gene

Genomics for MIR5002 Gene

GeneHancer (GH) Regulatory Elements for MIR5002 Gene

Promoters and enhancers for MIR5002 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I124131 Enhancer 0.7 Ensembl dbSUPER 550.8 -1.1 -1129 0.4 SREBF1 CEBPB FOS ATF2 MIR5002 KALRN
GH03I124132 Enhancer 0.2 dbSUPER 550.8 +0.1 62 1.7 MIR5002 RPL7P15 KALRN
GH03I124118 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.4 -13.4 -13416 1.6 JUND USF1 POLR2A RCOR1 MIR5002 KALRN
GH03I124144 Enhancer 0.6 dbSUPER 0.4 +12.1 12111 1.9 ZNF521 ZNF473 SOX6 ZNF114 YBX1 SALL2 ZNF148 ZNF707 NONO ZNF776 SEC22A UMPS ITGB5 RPL7P15 MIR5002 KALRN
GH03I124032 Enhancer 1.1 Ensembl ENCODE 0.2 -99.4 -99377 2.9 PKNOX1 ZNF493 ZNF133 SIN3A GLI4 ZNF2 GLIS2 ZNF143 SP3 REST KALRN SEC22A ROPN1 UMPS MIR5002
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR5002 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR5002 Gene

Genomic Locations for MIR5002 Gene
chr3:124,132,929-124,133,025
(GRCh38/hg38)
Size:
97 bases
Orientation:
Plus strand
chr3:123,851,776-123,851,872
(GRCh37/hg19)

Genomic View for MIR5002 Gene

Genes around MIR5002 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR5002 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR5002 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5002 Gene

Proteins for MIR5002 Gene

Post-translational modifications for MIR5002 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5002 Gene

Domains & Families for MIR5002 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR5002 Gene

Function for MIR5002 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR5002 Gene

Localization for MIR5002 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR5002 Gene

Pathways & Interactions for MIR5002 Gene

SuperPathways for MIR5002 Gene

No Data Available

Interacting Proteins for MIR5002 Gene

Gene Ontology (GO) - Biological Process for MIR5002 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR5002 Gene

Drugs & Compounds for MIR5002 Gene

No Compound Related Data Available

Transcripts for MIR5002 Gene

mRNA/cDNA for MIR5002 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5002 Gene

No ASD Table

Relevant External Links for MIR5002 Gene

GeneLoc Exon Structure for
MIR5002
ECgene alternative splicing isoforms for
MIR5002

Expression for MIR5002 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR5002 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR5002 Gene:

MIR5002
genes like me logo Genes that share expression patterns with MIR5002: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR5002 Gene

Orthologs for MIR5002 Gene

Evolution for MIR5002 Gene

ENSEMBL:
Gene Tree for MIR5002 (if available)
TreeFam:
Gene Tree for MIR5002 (if available)

No data available for Orthologs for MIR5002 Gene

Paralogs for MIR5002 Gene

No data available for Paralogs for MIR5002 Gene

Variants for MIR5002 Gene

Sequence variations from dbSNP and Humsavar for MIR5002 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1002465208 -- 124,133,519(+) A/T downstream_transcript_variant
rs1002756331 -- 124,132,386(+) G/A upstream_transcript_variant
rs1002928127 -- 124,132,011(+) C/T upstream_transcript_variant
rs1003278769 -- 124,132,132(+) G/C upstream_transcript_variant
rs1004875830 -- 124,132,815(+) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR5002 Gene

Variant ID Type Subtype PubMed ID
nsv1001677 CNV loss 25217958
nsv460837 CNV gain 19166990
nsv591428 CNV gain 21841781
nsv829711 CNV gain 17160897

Additional Variant Information for MIR5002 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR5002

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR5002 Gene

Disorders for MIR5002 Gene

Additional Disease Information for MIR5002

No disorders were found for MIR5002 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR5002 Gene

Publications for MIR5002 Gene

  1. Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis. (PMID: 21558790) Hansen TB … Bramsen JB (RNA biology 2011) 3 58
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR5002 Gene

Sources for MIR5002 Gene

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