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Aliases for MIR5000 Gene

Subcategory (RNA class) for MIR5000 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR5000 Gene

  • MicroRNA 5000 2 3
  • Hsa-Mir-5000 3

External Ids for MIR5000 Gene

Summaries for MIR5000 Gene

Entrez Gene Summary for MIR5000 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR5000 Gene

MIR5000 (MicroRNA 5000) is a RNA Gene, and belongs to miRNA RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR5000 Gene

Genomics for MIR5000 Gene

Genomic Location for MIR5000 Gene

Start:
75,090,812 bp from pter
End:
75,090,914 bp from pter
Size:
103 bases
Orientation:
Plus strand

Genomic View for MIR5000 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR5000 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR5000 Gene

No data available for Regulatory Elements for MIR5000 Gene

Proteins for MIR5000 Gene

Post-translational modifications for MIR5000 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR5000 Gene

Domains for MIR5000 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for MIR5000 Gene

Function for MIR5000 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR5000 Gene

Localization for MIR5000 Gene

No data available for Gene Ontology (GO) - Cellular Components for MIR5000 Gene

Pathways for MIR5000 Gene

SuperPathways for MIR5000 Gene

No Data Available

Interacting Proteins for MIR5000 Gene

Gene Ontology (GO) - Biological Process for MIR5000 Gene

None

No data available for Pathways by source for MIR5000 Gene

Transcripts for MIR5000 Gene

mRNA/cDNA for MIR5000 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR5000 Gene

No ASD Table

Relevant External Links for MIR5000 Gene

GeneLoc Exon Structure for
MIR5000
ECgene alternative splicing isoforms for
MIR5000

Expression for MIR5000 Gene

mRNA expression in normal human tissues for MIR5000 Gene

genes like me logo Genes that share expressions with MIR5000: view

Orthologs for MIR5000 Gene

Evolution for MIR5000 Gene

ENSEMBL:
Gene Tree for MIR5000 (if available)
TreeFam:
Gene Tree for MIR5000 (if available)

No data available for Orthologs for MIR5000 Gene

Paralogs for MIR5000 Gene

No data available for Paralogs for MIR5000 Gene

Variants for MIR5000 Gene

Relevant External Links for MIR5000 Gene

HapMap Linkage Disequilibrium report
MIR5000

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for MIR5000 Gene

Disorders for MIR5000 Gene

No disorders were found for MIR5000 Gene.

No data available for UniProtKB/Swiss-Prot for MIR5000 Gene

Publications for MIR5000 Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis. (PMID: 21558790) Hansen T.B. … Bramsen J.B. (RNA Biol 2011) 3
  3. Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia. (PMID: 21606961) Schotte D. … den Boer M.L. (Leukemia 2011) 3
  4. MiR-5000-3p, miR-5009-3P and miR-552: potential microRNA biomarkers of side population cells in colon cancer. (PMID: 24898979) Xia Z.S. … Chen G.C. (Oncol. Rep. 2014) 3

Products for MIR5000 Gene

Sources for MIR5000 Gene

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