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Aliases for MIR489 Gene

Subcategory (RNA class) for MIR489 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR489 Gene

  • MicroRNA 489 2 3 5
  • Hsa-Mir-489 3
  • Mir-489 3
  • MIRN489 3

External Ids for MIR489 Gene

Previous HGNC Symbols for MIR489 Gene

  • MIRN489

Previous GeneCards Identifiers for MIR489 Gene

  • GC07M092953
  • GC07M093114
  • GC07M093116
  • GC07M093118

Summaries for MIR489 Gene

Entrez Gene Summary for MIR489 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR489 Gene

MIR489 (MicroRNA 489) is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for MIR489 Gene

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

View fRNAdb secondary structures for MIR489

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR489 Gene

Genomics for MIR489 Gene

Regulatory Elements for MIR489 Gene

Enhancers for MIR489 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F093558 0.7 Ensembl 10.2 -75.6 -75583 1.6 ATF1 MAFG ATF2 JUND ZNF316 CBX8 ATF3 ZNF692 IRF1 MAFK MIR489 MIR653 HEPACAM2 CALCR LOC105375400
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR489 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR489 Gene

Chromosome:
7
Start:
93,483,936 bp from pter
End:
93,484,019 bp from pter
Size:
84 bases
Orientation:
Minus strand

Genomic View for MIR489 Gene

Genes around MIR489 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR489 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR489 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR489 Gene

ORGUL Member Location for MIR489 Gene

ORGUL Member Location for MIR489 gene

Proteins for MIR489 Gene

Post-translational modifications for MIR489 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR489 Gene

Domains & Families for MIR489 Gene

Gene Families for MIR489 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR489: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR489 Gene

Function for MIR489 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR489 Gene

Localization for MIR489 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR489 Gene

Pathways & Interactions for MIR489 Gene

SuperPathways for MIR489 Gene

No Data Available

Interacting Proteins for MIR489 Gene

Gene Ontology (GO) - Biological Process for MIR489 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR489 Gene

Transcripts for MIR489 Gene

fRNAdb Secondary structures for MIR489 Gene

  • hsa-mir-489_MI0003124_Homo_sapiens_miR-489_stem-loop_hairpin

mRNA/cDNA for MIR489 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR489 Gene

No ASD Table

Relevant External Links for MIR489 Gene

GeneLoc Exon Structure for
MIR489
ECgene alternative splicing isoforms for
MIR489

Expression for MIR489 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR489 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR489 Gene:

MIR489
genes like me logo Genes that share expression patterns with MIR489: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR489 Gene

Orthologs for MIR489 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MIR489 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-489 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia cfa-mir-489 35
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia bta-mir-489 35
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mir489 35
  • 63 (a)
OneToOne
chicken
(Gallus gallus)
Aves gga-mir-489 35
  • 76 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia aca-mir-489 35
  • 77 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii dre-mir-489 35
  • 69 (a)
OneToOne
Species where no ortholog for MIR489 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for MIR489 Gene

ENSEMBL:
Gene Tree for MIR489 (if available)
TreeFam:
Gene Tree for MIR489 (if available)

Paralogs for MIR489 Gene

No data available for Paralogs for MIR489 Gene

Variants for MIR489 Gene

Sequence variations from dbSNP and Humsavar for MIR489 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10488542 -- 93,485,052(+) ATTAA(G/T)TAGGA intron-variant, upstream-variant-2KB
rs112701489 -- 93,483,619(+) ATTTT(A/T)TACAA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs114227018 -- 93,485,253(+) TGTTC(A/G)GTTAT intron-variant, upstream-variant-2KB
rs13247514 -- 93,484,652(+) TACTG(G/T)GTAAT intron-variant, upstream-variant-2KB
rs13247515 -- 93,484,654(+) CTGTG(G/T)AATTC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR489 Gene

Variant ID Type Subtype PubMed ID
nsv607815 CNV loss 21841781

Relevant External Links for MIR489 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR489

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR489 Gene

Disorders for MIR489 Gene

Relevant External Links for MIR489

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR489

No disorders were found for MIR489 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR489 Gene

Publications for MIR489 Gene

  1. Identification of hundreds of conserved and nonconserved human microRNAs. (PMID: 15965474) Bentwich I. … Bentwich Z. (Nat. Genet. 2005) 1 3 64
  2. Regulation of alveolar septation by microRNA-489. (PMID: 26719145) Olave N. … Ambalavanan N. (Am. J. Physiol. Lung Cell Mol. Physiol. 2016) 3 64
  3. GSE1 negative regulation by miR-489-5p promotes breast cancer cell proliferation and invasion. (PMID: 26828271) Chai P. … Liu B. (Biochem. Biophys. Res. Commun. 2016) 3 64
  4. Down-regulation of miR-489 contributes into NSCLC cell invasion through targeting SUZ12. (PMID: 25833694) Xie Z. … Wang Z. (Tumour Biol. 2015) 3 64
  5. MiR-489 modulates cisplatin resistance in human ovarian cancer cells by targeting Akt3. (PMID: 24686007) Wu H. … Hao Q. (Anticancer Drugs 2014) 3 64

Products for MIR489 Gene

Sources for MIR489 Gene

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