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Aliases for MIR4798 Gene

Subcategory (RNA class) for MIR4798 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR4798 Gene

  • MicroRNA 4798 2 3 5
  • Hsa-Mir-4798 3

External Ids for MIR4798 Gene

Previous GeneCards Identifiers for MIR4798 Gene

  • GC04U901497

Summaries for MIR4798 Gene

Entrez Gene Summary for MIR4798 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR4798 Gene

MIR4798 (MicroRNA 4798) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR4798 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR4798 Gene

Genomics for MIR4798 Gene

Regulatory Elements for MIR4798 Gene

Enhancers for MIR4798 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H007313 0.8 FANTOM5 dbSUPER 0.7 +3.2 3167 0 CEBPB ATF2 NR2F2 SORCS2 MIR4798 TRSUP-TTA3-1
GH04H007324 0.9 ENCODE dbSUPER 0.4 +13.6 13599 0 CTCF ZBTB10 TBP MAZ ZNF366 POLR3A PATZ1 IKZF1 PRDM10 TRSUP-TTA3-1 MIR4798
GH04H007303 0.5 dbSUPER 0.7 -2.7 -2663 8 ZSCAN4 PAX8 ZIC2 SORCS2 MIR4798 GC04P007298
GH04H007314 0.6 dbSUPER 0.4 +5.9 5885 2 ZNF776 ZNF366 CREB1 YBX1 ATF2 FOXP1 MIR4798 TRSUP-TTA3-1
GH04H007322 0.5 ENCODE dbSUPER 0.4 +12.4 12379 0 TRSUP-TTA3-1 MIR4798
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR4798 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR4798 Gene

Chromosome:
4
Start:
7,310,450 bp from pter
End:
7,310,524 bp from pter
Size:
75 bases
Orientation:
Plus strand

Genomic View for MIR4798 Gene

Genes around MIR4798 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR4798 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR4798 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR4798 Gene

Proteins for MIR4798 Gene

Post-translational modifications for MIR4798 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR4798 Gene

Domains & Families for MIR4798 Gene

Gene Families for MIR4798 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR4798: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR4798 Gene

Function for MIR4798 Gene

Animal Model Products

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR4798
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR4798 Gene

Localization for MIR4798 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR4798 Gene

Pathways & Interactions for MIR4798 Gene

SuperPathways for MIR4798 Gene

No Data Available

Interacting Proteins for MIR4798 Gene

Gene Ontology (GO) - Biological Process for MIR4798 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR4798 Gene

Drugs & Compounds for MIR4798 Gene

No Compound Related Data Available

Transcripts for MIR4798 Gene

mRNA/cDNA for MIR4798 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR4798
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MIR4798 Gene

No ASD Table

Relevant External Links for MIR4798 Gene

GeneLoc Exon Structure for
MIR4798
ECgene alternative splicing isoforms for
MIR4798

Expression for MIR4798 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR4798 Gene:

MIR4798
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR4798 Gene

Orthologs for MIR4798 Gene

Evolution for MIR4798 Gene

ENSEMBL:
Gene Tree for MIR4798 (if available)
TreeFam:
Gene Tree for MIR4798 (if available)

No data available for Orthologs for MIR4798 Gene

Paralogs for MIR4798 Gene

No data available for Paralogs for MIR4798 Gene

Variants for MIR4798 Gene

Sequence variations from dbSNP and Humsavar for MIR4798 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1002105089 -- 7,309,305(+) TCTGG(C/T)CTCGT intron-variant, upstream-variant-2KB
rs1002561074 -- 7,309,451(+) GTCCC(A/G)ATCAA intron-variant, upstream-variant-2KB
rs1003235175 -- 7,308,927(+) ATGCC(A/G)AGACC intron-variant, upstream-variant-2KB
rs1003505729 -- 7,310,180(+) TCCTG(A/C)CCTGG intron-variant, upstream-variant-2KB
rs1005802804 -- 7,309,664(+) GAATT(C/T)GGTTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR4798 Gene

Variant ID Type Subtype PubMed ID
dgv1458e212 CNV loss 25503493
esv34033 CNV loss 18971310
esv34196 OTHER inversion 12058347
nsv508994 CNV insertion 20534489
nsv593569 CNV gain 21841781
nsv593570 CNV loss 21841781
nsv829850 CNV loss 17160897

Relevant External Links for MIR4798 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR4798

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR4798 Gene

Disorders for MIR4798 Gene

Relevant External Links for MIR4798

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR4798

No disorders were found for MIR4798 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR4798 Gene

Publications for MIR4798 Gene

  1. miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. (PMID: 21911355) Friedländer MR … Rajewsky N (Nucleic acids research 2012) 3 60
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H … Rovira C (Cancer research 2011) 3 60
  3. Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis. (PMID: 21558790) Hansen TB … Bramsen JB (RNA biology 2011) 3 60
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR4798 Gene

Sources for MIR4798 Gene

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