Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR4797 Gene

Subcategory (RNA class) for MIR4797 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR4797 Gene

  • MicroRNA 4797 2 3 5
  • Hsa-Mir-4797 3

External Ids for MIR4797 Gene

Previous GeneCards Identifiers for MIR4797 Gene

  • GC03U901786
  • GC03M197024

Summaries for MIR4797 Gene

Entrez Gene Summary for MIR4797 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR4797 Gene

MIR4797 (MicroRNA 4797) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR4797 Gene

Genomics for MIR4797 Gene

Regulatory Elements for MIR4797 Gene

Enhancers for MIR4797 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F197296 1.1 ENCODE 0.8 -4.2 -4183 5.2 HDGF PKNOX1 ZFP64 ARID4B SIN3A YY1 FOS SP3 SP5 NFYC LRCH3 DLG1 UBXN7 ENSG00000234742 MELTF CEP19 DLG1-AS1 MIR4797
GH03F197295 0.6 Ensembl 0.8 -1.4 -1353 0.2 ZNF121 ZNF664 CEBPA CEBPB REST CEBPG DLG1 DLG1-AS1 MIR4797
GH03F197294 0.5 Ensembl 0.8 -0.7 -653 0.4 POLR2A CEBPB ZBTB33 DLG1 DLG1-AS1 MIR4797
GH03F197289 0.5 ENCODE 0.8 +3.7 3676 1.2 POLR2A CEBPB PRDM1 DLG1 MIR4797 GC03P197175
GH03F197293 0.5 Ensembl 0.8 +0.0 48 0.6 SOX13 SOX5 CEBPA SPI1 DLG1 MIR4797 GC03P197175
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR4797 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR4797 Gene

Chromosome:
3
Start:
197,293,878 bp from pter
End:
197,293,948 bp from pter
Size:
71 bases
Orientation:
Minus strand

Genomic View for MIR4797 Gene

Genes around MIR4797 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR4797 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR4797 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR4797 Gene

Proteins for MIR4797 Gene

Post-translational modifications for MIR4797 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR4797 Gene

Domains & Families for MIR4797 Gene

Gene Families for MIR4797 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR4797: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR4797 Gene

Function for MIR4797 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR4797 Gene

Localization for MIR4797 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR4797 Gene

Pathways & Interactions for MIR4797 Gene

SuperPathways for MIR4797 Gene

No Data Available

Interacting Proteins for MIR4797 Gene

Gene Ontology (GO) - Biological Process for MIR4797 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR4797 Gene

Transcripts for MIR4797 Gene

mRNA/cDNA for MIR4797 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR4797 Gene

No ASD Table

Relevant External Links for MIR4797 Gene

GeneLoc Exon Structure for
MIR4797
ECgene alternative splicing isoforms for
MIR4797

Expression for MIR4797 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR4797 Gene:

MIR4797
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR4797 Gene

Orthologs for MIR4797 Gene

Evolution for MIR4797 Gene

ENSEMBL:
Gene Tree for MIR4797 (if available)
TreeFam:
Gene Tree for MIR4797 (if available)

No data available for Orthologs for MIR4797 Gene

Paralogs for MIR4797 Gene

No data available for Paralogs for MIR4797 Gene

Variants for MIR4797 Gene

Sequence variations from dbSNP and Humsavar for MIR4797 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10651317 -- 197,293,627(+) TAGAG(-/ACTC)ACTCA intron-variant, downstream-variant-500B
rs111273412 -- 197,293,965(+) CAAAC(A/G)CTATG intron-variant, upstream-variant-2KB
rs113559016 -- 197,295,042(+) CAGAG(A/G)AATCC intron-variant, upstream-variant-2KB
rs114358295 -- 197,294,173(+) AACAC(A/G)CAGAA intron-variant, upstream-variant-2KB
rs138412645 -- 197,294,706(+) AAGTT(C/T)AATTG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR4797 Gene

Variant ID Type Subtype PubMed ID
dgv5038n100 CNV gain 25217958
dgv635n27 CNV gain 19166990
esv2759214 CNV gain+loss 17122850
esv3599293 CNV gain 21293372
esv3599304 CNV gain 21293372
esv3893852 CNV gain 25118596
nsv428431 CNV gain+loss 18775914
nsv471149 CNV gain 18288195
nsv516873 CNV gain+loss 19592680
nsv593116 CNV gain 21841781
nsv818205 CNV gain 17921354
nsv829830 CNV gain 17160897

Relevant External Links for MIR4797 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR4797

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR4797 Gene

Disorders for MIR4797 Gene

Relevant External Links for MIR4797

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR4797

No disorders were found for MIR4797 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR4797 Gene

Publications for MIR4797 Gene

  1. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR4797 Gene

Sources for MIR4797 Gene

Content
Loading form....