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Aliases for MIR4788 Gene

Subcategory (RNA class) for MIR4788 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR4788 Gene

  • MicroRNA 4788 2 3 5
  • Hsa-Mir-4788 3

External Ids for MIR4788 Gene

Previous GeneCards Identifiers for MIR4788 Gene

  • GC03U901805
  • GC03P134161

Summaries for MIR4788 Gene

Entrez Gene Summary for MIR4788 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR4788 Gene

MIR4788 (MicroRNA 4788) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR4788 Gene

Genomics for MIR4788 Gene

Regulatory Elements for MIR4788 Gene

Enhancers for MIR4788 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G134460 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +25.7 25700 6.8 TEAD4 MAX SIN3A RBBP5 BMI1 ZNF316 POLR2A FOS MAFK NFE2L2 ANAPC13 AMOTL2 CEP63 MIR4788
GH03G134445 1 Ensembl ENCODE dbSUPER 0.4 +8.1 8074 0.2 NFIC NFIA NFIB RAD21 NR2F2 MIR4788 CEP63
GH03G134471 1.2 Ensembl ENCODE dbSUPER 0.3 +35.1 35114 3.4 CTCF TEAD4 MAX SIN3A RAD21 RFX5 TEAD3 GATA3 ZNF143 SMC3 ANAPC13 RYK CEP63 MIR4788
GH03G134482 1.7 FANTOM5 ENCODE dbSUPER 0.2 +47.4 47407 6.0 HDGF HNRNPUL1 PKNOX1 FOXA2 MLX ARNT CREB3L1 ARID4B SIN3A DMAP1 ANAPC13 CEP63 MIR4788
GH03G134476 0.9 ENCODE dbSUPER 0.3 +39.7 39700 2.9 CTCF ZNF654 TRIM22 RAD21 FOSL1 ZNF579 JUND GATA3 GATA2 ATF3 ANAPC13 CEP63 MIR4788
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR4788 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR4788 Gene

Chromosome:
3
Start:
134,437,827 bp from pter
End:
134,437,906 bp from pter
Size:
80 bases
Orientation:
Plus strand

Genomic View for MIR4788 Gene

Genes around MIR4788 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR4788 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR4788 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR4788 Gene

Proteins for MIR4788 Gene

Post-translational modifications for MIR4788 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR4788 Gene

Domains & Families for MIR4788 Gene

Gene Families for MIR4788 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR4788: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR4788 Gene

Function for MIR4788 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR4788 Gene

Localization for MIR4788 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR4788 Gene

Pathways & Interactions for MIR4788 Gene

SuperPathways for MIR4788 Gene

No Data Available

Interacting Proteins for MIR4788 Gene

Gene Ontology (GO) - Biological Process for MIR4788 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR4788 Gene

Drugs & Compounds for MIR4788 Gene

No Compound Related Data Available

Transcripts for MIR4788 Gene

mRNA/cDNA for MIR4788 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR4788 Gene

No ASD Table

Relevant External Links for MIR4788 Gene

GeneLoc Exon Structure for
MIR4788
ECgene alternative splicing isoforms for
MIR4788

Expression for MIR4788 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR4788 Gene:

MIR4788
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR4788 Gene

Orthologs for MIR4788 Gene

Evolution for MIR4788 Gene

ENSEMBL:
Gene Tree for MIR4788 (if available)
TreeFam:
Gene Tree for MIR4788 (if available)

No data available for Orthologs for MIR4788 Gene

Paralogs for MIR4788 Gene

No data available for Paralogs for MIR4788 Gene

Variants for MIR4788 Gene

Sequence variations from dbSNP and Humsavar for MIR4788 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000544275 -- 134,436,324(+) CCAGC(A/C)CTTTG upstream-variant-2KB
rs1000576795 -- 134,436,441(+) TGTAG(G/T)CCCAG upstream-variant-2KB
rs1000942233 -- 134,436,400(+) AAAAA(C/G/T)ACAAA upstream-variant-2KB
rs1001770041 -- 134,435,995(+) AGACG(A/C/T)ATTTT upstream-variant-2KB
rs1004775046 -- 134,436,454(+) ACTCA(A/G)GAGGC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR4788 Gene

Variant ID Type Subtype PubMed ID
nsv1007607 CNV gain 25217958
nsv967068 CNV duplication 23825009

Relevant External Links for MIR4788 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR4788

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR4788 Gene

Disorders for MIR4788 Gene

Relevant External Links for MIR4788

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR4788

No disorders were found for MIR4788 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR4788 Gene

Publications for MIR4788 Gene

  1. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR4788 Gene

Sources for MIR4788 Gene

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