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Aliases for MIR4780 Gene

Subcategory (RNA class) for MIR4780 Gene


Quality Score for this RNA gene is


Aliases for MIR4780 Gene

  • MicroRNA 4780 2 3 5
  • Hsa-Mir-4780 3

External Ids for MIR4780 Gene

Previous GeneCards Identifiers for MIR4780 Gene

  • GC02U902433
  • GC02M088384

Summaries for MIR4780 Gene

Entrez Gene Summary for MIR4780 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR4780 Gene

MIR4780 (MicroRNA 4780) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR4780 Gene

Genomics for MIR4780 Gene

Regulatory Elements for MIR4780 Gene

Enhancers for MIR4780 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G088074 1.1 FANTOM5 Ensembl ENCODE 0.4 +7.6 7635 1.4 HLF CEBPB CEBPG ZBTB40 RAD21 ZNF7 JUND CEBPA FABP1 THNSL2 SMYD1 MIR4780
GH02G088066 1 Ensembl ENCODE 0.4 +14.6 14569 3.6 PKNOX1 IRF2 L3MBTL2 HCFC1 E2F5 BACH1 ZBTB40 ZNF83 YY1 FOSL1 FABP1 THNSL2 SMYD1 MIR4780
GH02G088099 0.7 ENCODE 0.4 -17.4 -17408 0.3 HDGF PKNOX1 SP3 CEBPB SP2 CEBPG FOSL1 ZFP69B ZNF366 PATZ1 THNSL2 RPIA MIR4780 FABP1
GH02G088121 0.7 dbSUPER 0.3 -39.8 -39760 1.5 PAF1 DRAP1 KLF6 SP5 ZNF48 YY1 TEAD3 SSRP1 ZGPAT POLR2A THNSL2 FABP1 MIR4780
GH02G088123 0.6 dbSUPER 0.3 -41.4 -41427 1.7 PAF1 CTCF POLR2A CEBPB CEBPG HNRNPL RBFOX2 THNSL2 FABP1 MIR4780
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR4780 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR4780 Gene

88,082,519 bp from pter
88,082,599 bp from pter
81 bases
Minus strand

Genomic View for MIR4780 Gene

Genes around MIR4780 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR4780 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR4780 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR4780 Gene

ORGUL Member Location for MIR4780 Gene

ORGUL Member Location for MIR4780 gene

Proteins for MIR4780 Gene

Post-translational modifications for MIR4780 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR4780 Gene

Domains & Families for MIR4780 Gene

Gene Families for MIR4780 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR4780: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR4780 Gene

Function for MIR4780 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR4780 Gene

Localization for MIR4780 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR4780 Gene

Pathways & Interactions for MIR4780 Gene

SuperPathways for MIR4780 Gene

No Data Available

Interacting Proteins for MIR4780 Gene

Gene Ontology (GO) - Biological Process for MIR4780 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR4780 Gene

Drugs & Compounds for MIR4780 Gene

No Compound Related Data Available

Transcripts for MIR4780 Gene

mRNA/cDNA for MIR4780 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR4780 Gene

No ASD Table

Relevant External Links for MIR4780 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR4780 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR4780 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR4780 Gene:

genes like me logo Genes that share expression patterns with MIR4780: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR4780 Gene

Orthologs for MIR4780 Gene

Evolution for MIR4780 Gene

Gene Tree for MIR4780 (if available)
Gene Tree for MIR4780 (if available)

No data available for Orthologs for MIR4780 Gene

Paralogs for MIR4780 Gene

No data available for Paralogs for MIR4780 Gene

Variants for MIR4780 Gene

Sequence variations from dbSNP and Humsavar for MIR4780 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000572770 -- 88,083,737(+) ACCCT(C/T)CCTGA intron-variant, upstream-variant-2KB
rs1002637728 -- 88,082,929(+) GGCCA(A/G)CAATG intron-variant, upstream-variant-2KB
rs1003076512 -- 88,083,366(+) TGAAC(A/G)ATGGG intron-variant, upstream-variant-2KB
rs1003235252 -- 88,084,169(+) CTCAA(A/T)CTCCT intron-variant, upstream-variant-2KB
rs1003538440 -- 88,083,180(+) CCTGC(A/T)CATCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR4780 Gene

Variant ID Type Subtype PubMed ID
dgv61n16 CNV deletion 17901297
dgv6947n54 CNV gain 21841781
nsv1072005 CNV deletion 25765185
nsv1130752 CNV deletion 24896259
nsv1148611 CNV deletion 26484159
nsv582383 CNV gain 21841781
nsv582384 CNV loss 21841781
nsv582386 CNV loss 21841781

Relevant External Links for MIR4780 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR4780 Gene

Disorders for MIR4780 Gene

Relevant External Links for MIR4780

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR4780 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR4780 Gene

Publications for MIR4780 Gene

  1. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR4780 Gene

Sources for MIR4780 Gene

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