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Aliases for MIR4779 Gene

Subcategory (RNA class) for MIR4779 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR4779 Gene

  • MicroRNA 4779 2 3 5
  • Hsa-Mir-4779 3

External Ids for MIR4779 Gene

Previous GeneCards Identifiers for MIR4779 Gene

  • GC02U902449
  • GC02M086422

Summaries for MIR4779 Gene

Entrez Gene Summary for MIR4779 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR4779 Gene

MIR4779 (MicroRNA 4779) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR4779 Gene

Genomics for MIR4779 Gene

Regulatory Elements for MIR4779 Gene

Enhancers for MIR4779 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F086189 0.8 ENCODE 0.8 +3.4 3442 1.3 HDGF PKNOX1 ATF1 ARNT CREB3L1 ELK1 GATA2 NCOA1 SMARCA4 PBX2 IMMT LOC100420889 C2orf68 ENSG00000231259 LOC102724642 SNORD94 KDM3A POLR1A MIR4779 GC02M086160
GH02F086193 0.8 ENCODE 0.8 -2.3 -2340 3.9 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 IMMT SNORD94 LOC102724642 ENSG00000231259 LOC100420889 LOC100996506 TMEM150A LOC105374845 C2orf68 ATOH8
GH02F086191 0.4 ENCODE 0.8 +1.6 1576 0.2 ZBTB33 YY1 SNORD94 KDM3A MIR4779 ENSG00000200241 GC02M086160
GH02F086184 0.5 Ensembl ENCODE 0.4 +7.4 7377 3.2 PKNOX1 SP2 FEZF1 REST ZFHX2 GATA3 ZNF366 IKZF1 ZNF341 ZNF512 IMMT SNORD94 KDM3A ENSG00000251974 POLR1A MIR4779 GC02M086160 ENSG00000200241
GH02F086187 0.6 ENCODE 0.4 +5.6 5557 0.1 SNORD94 KDM3A CD8A MIR4779 GC02M086160 ENSG00000200241
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR4779 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR4779 Gene

Chromosome:
2
Start:
86,193,026 bp from pter
End:
86,193,108 bp from pter
Size:
83 bases
Orientation:
Minus strand

Genomic View for MIR4779 Gene

Genes around MIR4779 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR4779 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR4779 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR4779 Gene

Proteins for MIR4779 Gene

Post-translational modifications for MIR4779 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR4779 Gene

Domains & Families for MIR4779 Gene

Gene Families for MIR4779 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR4779: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR4779 Gene

Function for MIR4779 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR4779 Gene

Localization for MIR4779 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR4779 Gene

Pathways & Interactions for MIR4779 Gene

SuperPathways for MIR4779 Gene

No Data Available

Interacting Proteins for MIR4779 Gene

Gene Ontology (GO) - Biological Process for MIR4779 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR4779 Gene

Transcripts for MIR4779 Gene

mRNA/cDNA for MIR4779 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR4779 Gene

No ASD Table

Relevant External Links for MIR4779 Gene

GeneLoc Exon Structure for
MIR4779
ECgene alternative splicing isoforms for
MIR4779

Expression for MIR4779 Gene

mRNA expression in normal human tissues for MIR4779 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR4779 Gene:

MIR4779
genes like me logo Genes that share expression patterns with MIR4779: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR4779 Gene

Orthologs for MIR4779 Gene

Evolution for MIR4779 Gene

ENSEMBL:
Gene Tree for MIR4779 (if available)
TreeFam:
Gene Tree for MIR4779 (if available)

No data available for Orthologs for MIR4779 Gene

Paralogs for MIR4779 Gene

No data available for Paralogs for MIR4779 Gene

Variants for MIR4779 Gene

Sequence variations from dbSNP and Humsavar for MIR4779 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs112697708 -- 86,195,079(+) CGGCC(C/T)TGATT intron-variant, upstream-variant-2KB
rs112792448 -- 86,194,778(+) GTTTC(A/C)GCTCC intron-variant, upstream-variant-2KB
rs11412841 -- 86,193,407(+) AAAAA(-/A/AA/AAA)GAAAG intron-variant, upstream-variant-2KB
rs114965074 -- 86,192,869(+) TGCTG(C/G)AGATT intron-variant, downstream-variant-500B
rs115483180 -- 86,193,221(+) CAACA(C/G)AGAGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR4779 Gene

Variant ID Type Subtype PubMed ID
dgv3885n100 CNV gain 25217958
dgv6946n54 CNV gain 21841781
dgv713e214 CNV gain 21293372
esv2751903 CNV gain 17911159
esv3591540 CNV gain 21293372
nsv458563 CNV gain 19166990
nsv458574 CNV gain 19166990
nsv582372 CNV gain 21841781

Relevant External Links for MIR4779 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR4779

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR4779 Gene

Disorders for MIR4779 Gene

Relevant External Links for MIR4779

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR4779

No disorders were found for MIR4779 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR4779 Gene

Publications for MIR4779 Gene

  1. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR4779 Gene

Sources for MIR4779 Gene

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