Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR4677 Gene

Subcategory (RNA class) for MIR4677 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR4677 Gene

  • MicroRNA 4677 2 3 5
  • Hsa-Mir-4677 3
  • Mir-4677 3

External Ids for MIR4677 Gene

Previous GeneCards Identifiers for MIR4677 Gene

  • GC01U903278
  • GC01P243512

Summaries for MIR4677 Gene

Entrez Gene Summary for MIR4677 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR4677 Gene

MIR4677 (MicroRNA 4677) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR4677 Gene

Genomics for MIR4677 Gene

Regulatory Elements for MIR4677 Gene

Enhancers for MIR4677 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F243323 0.7 FANTOM5 Ensembl 0.3 -22.5 -22451 0.7 PRDM1 CEP170 SDCCAG8 PIR31594 MIR4677
GH01F243325 0.7 ENCODE 0.3 -20.7 -20653 0.1 CTCF ZNF654 CEBPB ZNF501 REST ZNF2 RAD21 RFX5 ATF3 SMC3 PIR31594 MIR4677
GH01F243354 0.5 Ensembl 0.4 +8.3 8326 1.0 IRF2 IRF1 PRDM1 YY1 MIR4677 GC01P243394
GH01F243390 0.5 Ensembl ENCODE 0.2 +44.6 44553 1.1 GC01P243394 MIR4677
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR4677 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR4677 Gene

Chromosome:
1
Start:
243,346,176 bp from pter
End:
243,346,255 bp from pter
Size:
80 bases
Orientation:
Plus strand

Genomic View for MIR4677 Gene

Genes around MIR4677 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR4677 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR4677 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR4677 Gene

Proteins for MIR4677 Gene

Post-translational modifications for MIR4677 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR4677 Gene

Domains & Families for MIR4677 Gene

Gene Families for MIR4677 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR4677: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR4677 Gene

Function for MIR4677 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR4677 Gene

Localization for MIR4677 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR4677 Gene

Pathways & Interactions for MIR4677 Gene

SuperPathways for MIR4677 Gene

No Data Available

Interacting Proteins for MIR4677 Gene

Gene Ontology (GO) - Biological Process for MIR4677 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR4677 Gene

Transcripts for MIR4677 Gene

mRNA/cDNA for MIR4677 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR4677 Gene

No ASD Table

Relevant External Links for MIR4677 Gene

GeneLoc Exon Structure for
MIR4677
ECgene alternative splicing isoforms for
MIR4677

Expression for MIR4677 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR4677 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR4677 Gene:

MIR4677
genes like me logo Genes that share expression patterns with MIR4677: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR4677 Gene

Orthologs for MIR4677 Gene

Evolution for MIR4677 Gene

ENSEMBL:
Gene Tree for MIR4677 (if available)
TreeFam:
Gene Tree for MIR4677 (if available)

No data available for Orthologs for MIR4677 Gene

Paralogs for MIR4677 Gene

No data available for Paralogs for MIR4677 Gene

Variants for MIR4677 Gene

Sequence variations from dbSNP and Humsavar for MIR4677 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs397515335 Pathogenic 243,344,278(+) AAAAG(-/G)AGCAC nc-transcript-variant, upstream-variant-2KB, reference, frameshift-variant
rs587777847 Pathogenic 243,344,302(+) CAAAA(-/A)CTAAC nc-transcript-variant, upstream-variant-2KB, reference, frameshift-variant
rs118064970 Uncertain significance 243,344,267(+) GGATG(A/G)GGCAG nc-transcript-variant, upstream-variant-2KB, reference, missense
rs79762798 Uncertain significance 243,344,238(+) TATCA(C/G)CTGAA nc-transcript-variant, upstream-variant-2KB, reference, missense
rs398050192 Benign 243,344,379(+) TAACA(-/A)TTCTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR4677 Gene

Variant ID Type Subtype PubMed ID
nsv1001488 CNV loss 25217958
nsv517939 CNV gain 19592680
nsv833070 CNV gain 17160897

Relevant External Links for MIR4677 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR4677

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR4677 Gene

Disorders for MIR4677 Gene

Relevant External Links for MIR4677

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR4677

No disorders were found for MIR4677 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR4677 Gene

Publications for MIR4677 Gene

  1. miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. (PMID: 21911355) FriedlAonder M.R. … Rajewsky N. (Nucleic Acids Res. 2012) 3 64
  2. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  3. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3 64
  4. Deep sequencing of small RNAs from human skin reveals major alterations in the psoriasis miRNAome. (PMID: 21807764) Joyce C.E. … Bowcock A.M. (Hum. Mol. Genet. 2011) 3 64
  5. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR4677 Gene

Sources for MIR4677 Gene

Content
Loading form....